BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0401100 Os05g0401100|AK067179
         (299 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54780.1  | chr1:20439533-20440953 FORWARD LENGTH=286          357   3e-99

>AT1G54780.1 | chr1:20439533-20440953 FORWARD LENGTH=286
          Length = 285

 Score =  357 bits (917), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 192/200 (96%)

Query: 100 EFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAF 159
           EF++LN GPP++TYVVDDAGVLSRVTKSD+K+L+ DLE RK +R+NFITVRKLTSKADAF
Sbjct: 86  EFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAF 145

Query: 160 EYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVL 219
           EYADQVLEKWYP++EEGNNKGIVVL+TSQKEGAITGGPAF++AVG+ ILD+TVSENLPVL
Sbjct: 146 EYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVL 205

Query: 220 ATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGG 279
           ATDEKYNEA+Y++AKRL AAIDG PDPGGPT KD+KRESNFKTKEET+EKRGQF+LVVGG
Sbjct: 206 ATDEKYNEAVYSSAKRLVAAIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGG 265

Query: 280 LLVIAFVVPMAQYYAYISKK 299
           LLVIAFVVPMAQY+AY+S+K
Sbjct: 266 LLVIAFVVPMAQYFAYVSRK 285



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,904,075
Number of extensions: 187530
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,419,801
Effective search space: 1692380001
Effective search space used: 1692380001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)