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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0399700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chitinase (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0105) R2 : 6.35e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00376 (0.0221) R2dN8 : 8.2e-05 R2N8 : 6.35e-05
σ : 0.198
deviance : 17.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.65 0.192 2.92 0.00477 0.0391 0.207 0.0599 0.809 0.0128 12.3 0.06952 3 -- --
16.46 0.19 2.92 -0.00241 0.0405 0.417 0.0224 -- 0.0146 13 0.06952 3 -- --
16.35 0.19 2.92 0.00135 0.0409 0.301 -- 0.558 0.0138 12.9 0.09968 3 -- --
16.46 0.19 2.92 -0.00143 0.0405 0.415 -- -- 0.0147 13.1 0.08364 3 -- --
16.45 0.19 2.92 0.000873 -- 0.285 -- 0.55 0.0127 -- 2.246e-07 3 -- --
17.89 0.198 2.92 0.0249 0.00828 -- -0.106 -- 0.00711 15.5 -- -- -- --
17.91 0.198 2.92 0.0231 0.0179 -- -- -- 0.00641 10.9 -- -- -- --
16.56 0.19 2.92 -0.00189 -- 0.398 -- -- 0.0136 -- 0.09211 3 -- --
16.46 0.19 2.92 -- 0.0405 0.415 -- -- 0.0149 13.1 0.08835 3 -- --
17.93 0.198 2.93 0.0228 -- -- -- -- 0.00629 -- -- -- -- --
17.93 0.198 2.93 -- 0.0178 -- -- -- 0.00383 10.8 -- -- -- --
16.56 0.19 2.92 -- -- 0.397 -- -- 0.0138 -- 0.09211 3 -- --
17.95 0.198 2.93 -- -- -- -- -- 0.00376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.68 humidity 90.0 10 > th dose independent rect. 13 1
19 16.68 humidity 90.0 10 > th dose dependent rect. 13 1
37 16.70 wind 1.0 90 < th dose dependent rect. 12 1
44 16.82 radiation 40.0 43200 < th dose dependent rect. 23 1
46 16.83 wind 1.0 10 < th dose independent rect. 23 6
49 16.84 wind 1.0 90 < th dose independent rect. 12 1
56 16.88 wind 1.0 10 < th dose dependent sin 13 NA
57 16.88 wind 1.0 10 < th dose dependent rect. 23 6
59 16.89 wind 9.0 1440 < th dose independent rect. 23 1
60 16.89 temperature 10.0 1440 > th dose independent rect. 23 1
63 16.89 temperature 30.0 1440 < th dose independent rect. 23 1
67 16.89 humidity 50.0 1440 > th dose independent rect. 23 1
77 16.89 atmosphere 995.0 1440 > th dose independent rect. 23 1
78 16.89 radiation 1.0 1440 < th dose independent rect. 23 1
98 16.89 temperature 10.0 1440 > th dose independent rect. 24 23
104 16.89 radiation 1.0 1440 < th dose dependent rect. 23 1
119 16.91 wind 1.0 10 < th dose independent rect. 23 1
122 16.91 temperature 25.0 30 > th dose independent rect. 22 1
135 16.91 wind 1.0 10 < th dose dependent rect. 23 1
138 16.91 temperature 20.0 30 > th dose dependent rect. 22 1
141 16.92 humidity 90.0 30 < th dose independent rect. 22 1
142 16.92 atmosphere 1005.0 30 > th dose dependent rect. 22 1
155 16.93 wind 1.0 10 < th dose dependent rect. 17 8
196 16.94 wind 1.0 10 < th dose dependent rect. 8 21
199 16.95 atmosphere 1005.0 30 > th dose independent rect. 22 1
200 16.95 atmosphere 995.0 30 > th dose dependent rect. 22 1
237 16.95 wind 1.0 10 < th dose dependent rect. 4 22
239 16.96 wind 1.0 30 > th dose independent rect. 22 1
240 16.96 humidity 80.0 30 > th dose independent rect. 22 1
241 16.96 precipitation 0.1 30 < th dose independent rect. 22 1
242 16.96 humidity 90.0 30 < th dose dependent rect. 22 1
244 16.96 precipitation 0.1 30 < th dose dependent rect. 22 1
264 16.97 wind 1.0 10 < th dose independent sin 13 NA
269 16.97 temperature 10.0 30 > th dose independent rect. 22 1
271 16.97 temperature 30.0 30 < th dose independent rect. 22 1
272 16.97 humidity 50.0 30 > th dose independent rect. 22 1
275 16.97 atmosphere 995.0 30 > th dose independent rect. 22 1
277 16.97 atmosphere 1010.0 30 < th dose independent rect. 22 1
279 16.97 radiation 1.0 30 < th dose independent rect. 22 1
284 16.97 temperature 10.0 30 > th dose independent rect. 23 23
287 16.97 wind 5.0 30 < th dose dependent rect. 22 1
290 16.97 radiation 1.0 30 < th dose dependent rect. 22 1
351 16.98 humidity 50.0 30 > th dose dependent rect. 22 1
372 16.99 wind 1.0 10 < th dose independent rect. 17 8
378 16.99 wind 1.0 10 < th dose dependent no NA NA
379 16.99 wind 1.0 30 > th dose dependent rect. 22 1
442 17.01 wind 9.0 30 < th dose independent rect. 23 23
450 17.02 atmosphere 1015.0 30 < th dose dependent rect. 22 1
466 17.03 wind 1.0 10 > th dose independent sin 13 NA
485 17.04 wind 1.0 10 < th dose independent rect. 7 22
487 17.04 radiation 10.0 90 < th dose dependent rect. 13 1
536 17.07 wind 1.0 10 > th dose independent rect. 23 23
563 17.08 temperature 30.0 30 < th dose dependent rect. 22 1
725 17.15 wind 1.0 10 < th dose independent rect. 23 19
767 17.16 wind 1.0 10 < th dose independent rect. 4 22
873 17.20 wind 1.0 10 > th dose independent rect. 16 15
908 17.21 wind 1.0 10 < th dose independent no NA NA
931 17.21 wind 1.0 10 > th dose independent rect. 15 23
970 17.22 wind 1.0 90 < th dose independent rect. 14 10
974 17.22 wind 1.0 10 > th dose independent rect. 18 14