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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0399400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endochitinase precursor (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.74 (0.0449) R2 : 0.226
β1 : -0.911 (0.164) R2dD : 0.0541 R2D : -0.0489
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.06 (0.0958) R2dN8 : 0.275 R2N8 : 0.172
σ : 0.843
deviance : 325.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.93 0.81 4.77 -1.15 0.383 0.827 1.02 -1.57 -1.22 9.42 41.18 624 -- --
300.01 0.807 4.76 -1.04 0.403 0.791 1.23 -- -1.18 8.82 41.19 629 -- --
300.61 0.808 4.77 -1.12 0.371 0.817 -- -1.68 -1.21 9.33 41.18 629 -- --
304.35 0.813 4.77 -0.923 0.41 0.747 -- -- -1.17 8.72 39.2 629 -- --
306.28 0.815 4.76 -0.985 -- 0.775 -- -1.43 -1.15 -- 36.87 458 -- --
314.66 0.832 4.74 -0.911 0.397 -- 0.465 -- -1.05 13.6 -- -- -- --
315.33 0.832 4.74 -0.894 0.406 -- -- -- -1.05 14.1 -- -- -- --
308.39 0.818 4.76 -0.972 -- 0.776 -- -- -1.13 -- 34.34 455 -- --
326.56 0.842 4.75 -- 0.383 0.696 -- -- -1.08 8.8 39.85 629 -- --
325.17 0.843 4.74 -0.911 -- -- -- -- -1.06 -- -- -- -- --
336.41 0.858 4.72 -- 0.422 -- -- -- -0.946 14.2 -- -- -- --
330.99 0.847 4.72 -- -- 0.731 -- -- -1.07 -- 57.07 564 -- --
347.07 0.87 4.72 -- -- -- -- -- -0.954 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 294.03 atmosphere 1005 1440 < th dose dependent rect. 14 1
2 294.09 humidity 70 90 < th dose independent rect. 14 19
8 294.73 temperature 25 4320 > th dose dependent rect. 1 9
10 294.80 temperature 25 4320 > th dose dependent rect. 8 1
14 294.88 temperature 25 4320 > th dose dependent rect. 7 3
15 294.89 humidity 70 270 < th dose independent rect. 12 20
25 295.10 radiation 20 270 > th dose independent rect. 13 19
33 295.38 radiation 20 270 > th dose independent sin 13 NA
34 295.38 temperature 30 270 < th dose dependent rect. 24 11
43 295.61 humidity 70 30 > th dose independent sin 12 NA
50 295.68 temperature 15 270 > th dose dependent rect. 2 10
52 295.70 humidity 70 90 < th dose independent sin 13 NA
63 295.83 radiation 20 270 < th dose independent sin 13 NA
65 295.84 humidity 80 90 < th dose dependent rect. 14 18
108 296.49 humidity 70 270 > th dose independent rect. 12 12
109 296.49 radiation 10 270 > th dose dependent sin 13 NA
122 296.62 humidity 70 270 < th dose independent rect. 12 8
134 296.66 atmosphere 1005 1440 < th dose independent rect. 8 1
135 296.68 temperature 20 720 > th dose independent rect. 21 10
138 296.70 temperature 20 720 > th dose independent rect. 23 8
144 296.75 radiation 10 270 > th dose dependent rect. 14 18
153 296.81 radiation 20 270 > th dose independent rect. 14 2
164 296.91 humidity 70 90 < th dose independent rect. 14 6
175 296.94 radiation 20 270 > th dose independent rect. 13 4
189 296.94 atmosphere 1005 1440 < th dose dependent sin 23 NA
195 297.00 temperature 30 4320 > th dose independent rect. 12 1
196 297.00 humidity 90 14400 > th dose independent rect. 4 2
220 297.05 temperature 30 4320 < th dose independent rect. 12 1
221 297.05 humidity 70 270 < th dose independent rect. 14 2
228 297.09 humidity 70 270 > th dose independent sin 16 NA
249 297.16 humidity 70 270 < th dose independent sin 17 NA
260 297.21 temperature 15 270 > th dose dependent sin 7 NA
300 297.39 atmosphere 1005 1440 > th dose independent rect. 8 1
304 297.40 temperature 30 4320 < th dose independent rect. 16 2
309 297.43 temperature 30 4320 < th dose independent rect. 16 14
330 297.55 temperature 30 4320 < th dose independent rect. 16 8
332 297.56 temperature 30 4320 < th dose independent rect. 16 4
350 297.60 atmosphere 1005 1440 > th dose independent rect. 8 3
371 297.69 atmosphere 1005 720 > th dose independent rect. 19 4
381 297.74 humidity 80 90 < th dose dependent rect. 14 5
395 297.83 radiation 40 720 < th dose independent rect. 19 19
406 297.88 atmosphere 1000 1440 > th dose independent rect. 14 3
408 297.88 temperature 20 270 > th dose independent rect. 20 15
414 297.90 temperature 30 4320 > th dose independent rect. 16 2
415 297.90 atmosphere 1000 1440 < th dose independent rect. 15 2
417 297.91 wind 5 14400 < th dose independent rect. 14 1
428 297.94 temperature 25 90 > th dose independent rect. 14 9
437 297.97 humidity 80 90 < th dose dependent rect. 14 3
445 298.01 radiation 40 720 < th dose independent rect. 12 19
450 298.01 temperature 15 270 > th dose dependent rect. 20 15
464 298.05 temperature 25 90 > th dose independent rect. 14 6
488 298.09 temperature 20 720 > th dose dependent rect. 24 7
511 298.17 humidity 80 90 < th dose dependent rect. 14 13
527 298.22 wind 5 14400 > th dose independent rect. 14 1
532 298.22 humidity 70 90 < th dose dependent sin 12 NA
571 298.37 humidity 80 720 > th dose independent rect. 23 8
583 298.41 radiation 20 720 > th dose dependent rect. 10 5
588 298.43 temperature 20 90 > th dose dependent rect. 14 5
663 298.63 atmosphere 1000 270 > th dose independent rect. 16 23
669 298.65 temperature 20 720 > th dose independent rect. 4 1
679 298.68 radiation 40 720 > th dose independent rect. 10 5
691 298.71 temperature 15 30 > th dose dependent sin 5 NA
692 298.71 temperature 20 90 > th dose dependent rect. 14 9
696 298.72 radiation 40 720 > th dose independent rect. 10 23
739 298.78 atmosphere 995 720 > th dose dependent rect. 12 17
740 298.79 atmosphere 1005 720 > th dose independent rect. 19 1
741 298.79 radiation 1 1440 > th dose independent rect. 6 1
743 298.80 temperature 20 270 > th dose independent sin 7 NA
779 298.86 temperature 10 720 > th dose dependent rect. 23 8
797 298.90 temperature 15 30 > th dose dependent rect. 23 15
818 298.92 radiation 40 720 < th dose independent rect. 12 3
830 298.94 atmosphere 1005 4320 > th dose independent rect. 23 2
832 298.94 radiation 10 270 > th dose dependent rect. 14 4
847 298.95 radiation 40 720 > th dose independent sin 18 NA
855 298.96 radiation 40 720 < th dose independent rect. 13 1
884 298.99 atmosphere 1005 4320 < th dose independent rect. 24 1
885 298.99 radiation 30 720 < th dose independent rect. 9 22
891 299.01 radiation 1 1440 < th dose independent rect. 6 1
910 299.03 temperature 30 4320 < th dose independent rect. 16 21
939 299.07 radiation 20 720 > th dose dependent rect. 10 21
982 299.13 radiation 40 270 < th dose dependent sin 15 NA
989 299.14 atmosphere 1005 1440 < th dose dependent no NA NA