Os05g0392100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0392100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.94 | 0.188 | 11.5 | 0.21 | 0.314 | -0.291 | 0.298 | 0.309 | 0.0889 | 9.07 | 28.45 | 10 | -- | -- |
| 16.05 | 0.188 | 11.5 | 0.262 | 0.313 | -0.306 | 0.237 | -- | 0.102 | 8.91 | 28.72 | 6 | -- | -- |
| 16.19 | 0.187 | 11.5 | 0.24 | 0.312 | -0.297 | -- | 0.187 | 0.0931 | 8.88 | 28.65 | 3 | -- | -- |
| 16.23 | 0.188 | 11.5 | 0.269 | 0.312 | -0.309 | -- | -- | 0.101 | 8.86 | 28.76 | 2 | -- | -- |
| 21.57 | 0.216 | 11.6 | 0.219 | -- | -0.393 | -- | 0.184 | 0.0772 | -- | 28.44 | 2 | -- | -- |
| 17.38 | 0.195 | 11.5 | 0.335 | 0.348 | -- | 0.227 | -- | 0.164 | 9.99 | -- | -- | -- | -- |
| 17.58 | 0.196 | 11.5 | 0.344 | 0.347 | -- | -- | -- | 0.165 | 9.98 | -- | -- | -- | -- |
| 21.63 | 0.217 | 11.6 | 0.249 | -- | -0.396 | -- | -- | 0.0841 | -- | 28.24 | 2 | -- | -- |
| 17.95 | 0.197 | 11.6 | -- | 0.308 | -0.419 | -- | -- | 0.052 | 8.36 | 28.8 | 2 | -- | -- |
| 24.82 | 0.233 | 11.5 | 0.339 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 20.69 | 0.213 | 11.5 | -- | 0.346 | -- | -- | -- | 0.126 | 9.9 | -- | -- | -- | -- |
| 23.16 | 0.224 | 11.6 | -- | -- | -0.458 | -- | -- | 0.0454 | -- | 28.23 | 2 | -- | -- |
| 27.86 | 0.246 | 11.5 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.89 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 2 | 13.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 9 | 14.05 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 28 | 14.36 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 42 | 14.47 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 16 |
| 46 | 14.49 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 9 |
| 57 | 14.54 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 58 | 14.54 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 64 | 14.56 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 73 | 14.60 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 79 | 14.61 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 97 | 14.67 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 105 | 14.68 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 16 |
| 120 | 14.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 154 | 14.78 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 16 |
| 157 | 14.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 168 | 14.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 169 | 14.80 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 15 |
| 191 | 14.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 205 | 14.85 | wind | 7.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 226 | 14.88 | temperature | 25.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 229 | 14.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 238 | 14.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 239 | 14.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 271 | 14.92 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 273 | 14.93 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 16 |
| 303 | 14.96 | radiation | 1.0 | 270 | > th | dose independent | sin | 8 | NA |
| 304 | 14.96 | radiation | 1.0 | 270 | < th | dose independent | sin | 8 | NA |
| 309 | 14.96 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 322 | 14.97 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 335 | 14.98 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 341 | 14.99 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 350 | 14.99 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 354 | 15.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 359 | 15.00 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 393 | 15.03 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 16 |
| 406 | 15.03 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 20 |
| 416 | 15.05 | temperature | 10.0 | 90 | > th | dose independent | rect. | 11 | 8 |
| 418 | 15.05 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 11 | 8 |
| 420 | 15.05 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 16 |
| 427 | 15.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 434 | 15.06 | wind | 1.0 | 90 | > th | dose independent | rect. | 11 | 8 |
| 436 | 15.06 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 8 |
| 443 | 15.06 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 495 | 15.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 496 | 15.10 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 506 | 15.10 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 18 |
| 516 | 15.11 | radiation | 1.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 548 | 15.12 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 16 |
| 554 | 15.13 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 9 |
| 570 | 15.13 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 577 | 15.14 | wind | 9.0 | 90 | < th | dose independent | rect. | 11 | 8 |
| 578 | 15.14 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 8 |
| 597 | 15.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 599 | 15.15 | temperature | 25.0 | 10 | > th | dose independent | rect. | 7 | 7 |
| 622 | 15.15 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 652 | 15.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 658 | 15.17 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 668 | 15.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 679 | 15.19 | temperature | 25.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 704 | 15.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 22 |
| 710 | 15.20 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 726 | 15.21 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 727 | 15.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 755 | 15.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 7 |
| 788 | 15.24 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 16 |
| 867 | 15.27 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 1 | 18 |
| 913 | 15.28 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 24 | 11 |
| 946 | 15.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 953 | 15.30 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 11 | 8 |
| 979 | 15.31 | radiation | 40.0 | 10 | < th | dose dependent | sin | 7 | NA |