BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0392100 Os05g0392100|AK099734
         (113 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17620.1  | chr4:9822005-9824859 FORWARD LENGTH=545            146   2e-36

>AT4G17620.1 | chr4:9822005-9824859 FORWARD LENGTH=545
          Length = 544

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 78/96 (81%), Gaps = 1/96 (1%)

Query: 17  PYIFFTCRNDAGVLIRTERLRTKEITQKVKAKNYWQGGVCLAFADEVLCWLYGTVRENED 76
           PYI    R+D G L+RTERL T++I  + + KNYWQGGVCLAFADEVLCWLYGTV+ENED
Sbjct: 443 PYIVVGFRDDGGRLVRTERLTTRDIAHRARLKNYWQGGVCLAFADEVLCWLYGTVKENED 502

Query: 77  YILQFVHPFNRLELLRAQSPCPDAITHHVEQLSGTA 112
           YILQFVHPF RLELL+AQS CPDAIT+HV  L   A
Sbjct: 503 YILQFVHPFMRLELLQAQS-CPDAITNHVHLLQNPA 537



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,447,683
Number of extensions: 89422
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)