Os05g0387900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0387900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.43 | 0.353 | 8.27 | -0.797 | 0.113 | -0.737 | 0.0761 | -0.027 | -0.353 | 5.7 | 29.2 | 91 | -- | -- |
| 56.43 | 0.35 | 8.27 | -0.802 | 0.113 | -0.736 | 0.0682 | -- | -0.354 | 5.74 | 29.2 | 91 | -- | -- |
| 56.45 | 0.35 | 8.27 | -0.802 | 0.112 | -0.732 | -- | 0.00393 | -0.353 | 5.8 | 29.19 | 91 | -- | -- |
| 56.45 | 0.35 | 8.27 | -0.8 | 0.112 | -0.732 | -- | -- | -0.353 | 5.83 | 29.19 | 91 | -- | -- |
| 56.91 | 0.351 | 8.27 | -0.766 | -- | -0.686 | -- | -0.118 | -0.343 | -- | 27.45 | 91 | -- | -- |
| 63.67 | 0.374 | 8.23 | -0.617 | 0.174 | -- | -0.00459 | -- | -0.204 | 13.1 | -- | -- | -- | -- |
| 63.67 | 0.374 | 8.23 | -0.618 | 0.174 | -- | -- | -- | -0.204 | 13.1 | -- | -- | -- | -- |
| 56.93 | 0.351 | 8.27 | -0.788 | -- | -0.681 | -- | -- | -0.35 | -- | 27.54 | 94 | -- | -- |
| 71.55 | 0.394 | 8.24 | -- | 0.0677 | -0.392 | -- | -- | -0.22 | 10.2 | 29.3 | 85 | -- | -- |
| 65.56 | 0.378 | 8.24 | -0.624 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 73.72 | 0.402 | 8.22 | -- | 0.185 | -- | -- | -- | -0.135 | 13.2 | -- | -- | -- | -- |
| 71.81 | 0.396 | 8.24 | -- | -- | -0.427 | -- | -- | -0.209 | -- | 29.3 | 85 | -- | -- |
| 75.84 | 0.406 | 8.22 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.02 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 47.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 9 | 47.83 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 67 | 49.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 87 | 50.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 150 | 51.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 154 | 51.19 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 156 | 51.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 167 | 51.29 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 180 | 51.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 202 | 51.62 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 19 |
| 206 | 51.66 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 244 | 51.96 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 260 | 52.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 299 | 52.23 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 307 | 52.25 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 321 | 52.34 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 375 | 52.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 400 | 52.71 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 18 |
| 438 | 52.88 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 448 | 52.92 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 465 | 53.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 533 | 53.26 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 558 | 53.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 567 | 53.36 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 577 | 53.40 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 607 | 53.51 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 633 | 53.56 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 662 | 53.64 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 20 |
| 714 | 53.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 715 | 53.77 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 727 | 53.79 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 762 | 53.88 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 794 | 53.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 797 | 53.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 804 | 53.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 819 | 54.02 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 829 | 54.05 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 840 | 54.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 841 | 54.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 843 | 54.09 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 862 | 54.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 876 | 54.18 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 878 | 54.18 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 882 | 54.19 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 895 | 54.21 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 896 | 54.22 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 898 | 54.22 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 901 | 54.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 902 | 54.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 904 | 54.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 905 | 54.22 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 916 | 54.24 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 925 | 54.25 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 2 | 6 |
| 962 | 54.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 17 |
| 964 | 54.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 999 | 54.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 9 |