BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0387900 Os05g0387900|AK062285
         (231 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41760.1  | chr2:17422864-17424255 FORWARD LENGTH=222          213   6e-56

>AT2G41760.1 | chr2:17422864-17424255 FORWARD LENGTH=222
          Length = 221

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 141/213 (66%), Gaps = 5/213 (2%)

Query: 21  LDASAFTHTPYYCEENVHLLCKELIRSGISDPAGTNLYAVFISNEEKKVPLWYQKASHSG 80
           +DA+ F HTPYYCEENV+LLCK L  +G+++   ++L+ VFISNE+K+VPLW+QKAS   
Sbjct: 11  MDATRFQHTPYYCEENVYLLCKTLCENGVAEATCSDLFVVFISNEKKQVPLWHQKASTRA 70

Query: 81  DGFVLWDYHVICIQSRRKNGEXXXXXXXXXXXXPFPCSFIQYVSDAIRPLSFGNSTYRRL 140
           DG VLWDYHVIC+Q R+K  +            PFP     YV++ I+P     + Y+R 
Sbjct: 71  DGVVLWDYHVICVQ-RKKESDSEPLVWDLDSTLPFPSPLASYVTETIQPSFQLFAEYQRF 129

Query: 141 FRVIHAPVFLRSFASDRSHMKDHAGNWIQLPPKYESIVAEDGTTNNLNEYITMSMDDV-- 198
           FR++HAP+F + FASDR HMK+  G+W   PP YE IVA+DG  +NL+EYI MS  D   
Sbjct: 130 FRIVHAPLFFKHFASDRRHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAMSGADTLS 189

Query: 199 -KDLESMADDVYSSKHGVVINETILPEFFSRLP 230
             D E++   + S K GVV++ T L + F++LP
Sbjct: 190 SLDPETVTAAI-SQKLGVVVSHTQLQDLFTKLP 221



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,020,848
Number of extensions: 198995
Number of successful extensions: 477
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)