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Os05g0383000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0147) R2 : 0.00205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.03 (0.031) R2dN8 : 0.00264 R2N8 : 0.00205
σ : 0.277
deviance : 35.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.84 0.181 11.6 0.307 0.6 0.476 -0.152 0.811 0.122 19.5 31.08 275 -- --
15.4 0.183 11.6 0.439 0.579 0.53 -0.248 -- 0.146 19.4 47.05 176 -- --
14.9 0.18 11.6 0.31 0.603 0.48 -- 0.841 0.12 19.5 31.17 277 -- --
15.56 0.184 11.6 0.447 0.575 0.546 -- -- 0.147 19.3 59.16 154 -- --
29.5 0.253 11.6 0.294 -- 0.379 -- 0.739 0.104 -- 33 1447 -- --
18.26 0.2 11.6 0.325 0.5 -- -0.303 -- 0.0723 20.3 -- -- -- --
18.54 0.202 11.6 0.334 0.501 -- -- -- 0.0721 20.3 -- -- -- --
30.03 0.255 11.6 0.451 -- 0.375 -- -- 0.136 -- 38.51 1461 -- --
20.3 0.21 11.6 -- 0.541 0.324 -- -- 0.0722 19.8 76.35 174 -- --
32.45 0.266 11.6 0.331 -- -- -- -- 0.0667 -- -- -- -- --
21.48 0.217 11.6 -- 0.499 -- -- -- 0.0349 20.4 -- -- -- --
34.14 0.273 11.6 -- -- 0.277 -- -- 0.0616 -- 76.35 174 -- --
35.33 0.277 11.6 -- -- -- -- -- 0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.99 temperature 15.0 90 > th dose dependent rect. 9 20
2 13.06 temperature 10.0 270 > th dose dependent rect. 7 21
11 13.45 temperature 15.0 10 > th dose dependent rect. 9 21
39 13.85 temperature 15.0 270 > th dose dependent rect. 16 22
44 13.90 temperature 30.0 270 < th dose dependent rect. 13 19
49 13.94 temperature 30.0 90 < th dose independent rect. 5 14
60 14.01 precipitation 0.1 43200 > th dose dependent rect. 17 2
64 14.04 wind 9.0 43200 > th dose dependent rect. 17 13
99 14.20 wind 9.0 43200 > th dose independent rect. 17 13
106 14.23 wind 9.0 43200 > th dose independent rect. 17 4
124 14.30 wind 9.0 43200 > th dose dependent rect. 17 5
134 14.33 wind 9.0 43200 < th dose independent rect. 17 4
169 14.39 wind 9.0 43200 < th dose independent rect. 17 13
200 14.47 atmosphere 995.0 14400 > th dose independent rect. 18 3
202 14.47 precipitation 0.1 4320 > th dose dependent rect. 13 5
220 14.50 precipitation 0.1 43200 > th dose independent rect. 17 1
223 14.50 temperature 30.0 270 < th dose dependent rect. 23 22
231 14.52 atmosphere 1000.0 43200 < th dose independent rect. 4 1
232 14.52 precipitation 0.1 43200 < th dose independent rect. 17 1
233 14.52 precipitation 0.1 43200 < th dose dependent rect. 17 1
246 14.54 atmosphere 1000.0 43200 > th dose independent rect. 4 1
258 14.56 atmosphere 1000.0 43200 > th dose independent rect. 22 1
260 14.56 atmosphere 1000.0 43200 < th dose independent rect. 22 1
262 14.56 precipitation 0.1 4320 < th dose independent rect. 17 1
265 14.56 precipitation 0.1 4320 < th dose dependent rect. 17 1
272 14.57 precipitation 0.1 4320 > th dose independent rect. 17 1
283 14.58 wind 7.0 43200 > th dose independent rect. 19 2
287 14.58 wind 5.0 43200 > th dose dependent rect. 20 1
294 14.59 wind 1.0 14400 < th dose dependent rect. 10 1
301 14.60 wind 9.0 43200 < th dose independent rect. 17 8
318 14.62 wind 7.0 43200 < th dose independent rect. 19 2
331 14.63 atmosphere 1000.0 43200 > th dose independent rect. 12 1
341 14.64 atmosphere 1000.0 43200 < th dose independent rect. 12 1
344 14.64 atmosphere 1000.0 43200 < th dose independent rect. 20 17
360 14.65 temperature 30.0 90 < th dose dependent rect. 5 18
361 14.65 temperature 10.0 720 > th dose dependent rect. 17 19
366 14.66 temperature 25.0 1440 < th dose independent rect. 8 1
372 14.66 atmosphere 1000.0 43200 < th dose independent rect. 20 10
381 14.66 atmosphere 1000.0 43200 > th dose independent rect. 21 16
399 14.67 atmosphere 1000.0 43200 > th dose independent rect. 21 9
424 14.67 precipitation 0.1 43200 > th dose dependent rect. 17 4
428 14.68 atmosphere 1000.0 43200 < th dose independent sin 7 NA
430 14.68 wind 1.0 14400 < th dose independent rect. 10 1
474 14.69 atmosphere 1000.0 43200 > th dose independent sin 7 NA
508 14.69 wind 9.0 43200 > th dose dependent rect. 20 2
537 14.70 atmosphere 1000.0 43200 < th dose independent rect. 1 12
606 14.71 precipitation 0.1 43200 > th dose dependent rect. 20 1
616 14.72 wind 1.0 14400 > th dose independent rect. 10 1
619 14.72 temperature 25.0 1440 > th dose independent rect. 8 1
704 14.73 atmosphere 1000.0 43200 < th dose independent rect. 10 19
714 14.73 atmosphere 1000.0 43200 < th dose independent rect. 4 22
731 14.74 atmosphere 1000.0 43200 < th dose independent no NA NA
769 14.74 atmosphere 1000.0 43200 < th dose independent rect. 10 15
785 14.74 atmosphere 1000.0 43200 < th dose independent rect. 4 20
825 14.74 temperature 30.0 90 < th dose dependent rect. 5 22
828 14.75 atmosphere 1000.0 43200 > th dose independent no NA NA
861 14.75 atmosphere 1000.0 43200 < th dose independent rect. 11 13
879 14.75 atmosphere 1000.0 43200 > th dose independent rect. 10 19
889 14.75 atmosphere 1000.0 43200 > th dose independent rect. 4 20
938 14.75 atmosphere 1000.0 43200 > th dose independent rect. 14 23
945 14.75 temperature 30.0 1440 < th dose dependent rect. 17 2
984 14.76 atmosphere 1000.0 43200 > th dose independent rect. 10 14
986 14.76 temperature 30.0 270 < th dose independent rect. 3 15