BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0383000 Os05g0383000|AK058345
         (164 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57090.1  | chr3:21128627-21129981 FORWARD LENGTH=171          214   1e-56
AT5G12390.1  | chr5:4010948-4011950 REVERSE LENGTH=168            182   8e-47

>AT3G57090.1 | chr3:21128627-21129981 FORWARD LENGTH=171
          Length = 170

 Score =  214 bits (546), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 120/150 (80%), Gaps = 3/150 (2%)

Query: 1   MEAKIGKLVESVGSFFSGGDTIPWCTRDIIAGCEREVAEAAN---EEQKSDSIMRLSWAL 57
           M+AKIG+  +SVG+FFSG D IPWC  D+IAGCEREV EA +   E+ K + +MRLSWAL
Sbjct: 1   MDAKIGQFFDSVGTFFSGSDKIPWCDGDVIAGCEREVREATDSGTEDLKKECLMRLSWAL 60

Query: 58  VHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYLLAVGHYRNGDYPRSRQLVDRCLEIQ 117
           VHS+  EDV RGI MLEASL  S  PL+ REKLYLLAVG+YR+G+Y RSRQLVDRC+E+Q
Sbjct: 61  VHSRQTEDVQRGIAMLEASLESSAPPLEDREKLYLLAVGYYRSGNYSRSRQLVDRCIEMQ 120

Query: 118 PDWRQALSLRKAIEDKIAKDGLIGIGIATT 147
            DWRQAL L+K IEDKI KDG+IGIGI  T
Sbjct: 121 ADWRQALVLKKTIEDKITKDGVIGIGITAT 150



>AT5G12390.1 | chr5:4010948-4011950 REVERSE LENGTH=168
          Length = 167

 Score =  182 bits (462), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 113/152 (74%), Gaps = 5/152 (3%)

Query: 1   MEAKIGKLVESVGSFFSGG-----DTIPWCTRDIIAGCEREVAEAANEEQKSDSIMRLSW 55
           M+A IGK+ +SV  FFSG      D  P C  DII+GCE+E+AEA +E +K + IMRLSW
Sbjct: 1   MDAAIGKVFDSVSDFFSGAASASADEFPLCDSDIISGCEKELAEAQDEGRKKECIMRLSW 60

Query: 56  ALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYLLAVGHYRNGDYPRSRQLVDRCLE 115
           ALVHSK   D+ RGI MLEA +    S ++ REKLYLLA+G+YR+GD+ RSR  ++RCLE
Sbjct: 61  ALVHSKMPSDIQRGIAMLEALVVNDTSAMKLREKLYLLALGYYRSGDFSRSRDCIERCLE 120

Query: 116 IQPDWRQALSLRKAIEDKIAKDGLIGIGIATT 147
           ++P+  QA +L+KAIED+I KDG+IG+GIA T
Sbjct: 121 VEPESGQAQALKKAIEDRIVKDGVIGVGIAVT 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,110,594
Number of extensions: 117131
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)