Os05g0381700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin-binding, plant family protein.
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Os05g0381700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin-binding, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.52 | 0.246 | 12.3 | 0.494 | 0.234 | 0.518 | -0.196 | 0.472 | 0.316 | 23.1 | 20.11 | 790 | -- | -- |
| 27.46 | 0.244 | 12.3 | 0.425 | 0.263 | 0.457 | -0.0636 | -- | 0.287 | 22.6 | 21.1 | 960 | -- | -- |
| 26.9 | 0.242 | 12.3 | 0.519 | 0.285 | 0.569 | -- | 0.582 | 0.303 | 22.8 | 21.1 | 1359 | -- | -- |
| 27.34 | 0.244 | 12.4 | 0.38 | 0.298 | 0.459 | -- | -- | 0.262 | 23.1 | 21.5 | 1853 | -- | -- |
| 30.32 | 0.256 | 12.3 | 0.529 | -- | 0.569 | -- | 0.488 | 0.321 | -- | 20.9 | 882 | -- | -- |
| 33.61 | 0.272 | 12.3 | 0.587 | 0.306 | -- | -0.0927 | -- | 0.394 | 23 | -- | -- | -- | -- |
| 33.65 | 0.272 | 12.3 | 0.591 | 0.307 | -- | -- | -- | 0.394 | 23 | -- | -- | -- | -- |
| 30.66 | 0.258 | 12.3 | 0.403 | -- | 0.522 | -- | -- | 0.259 | -- | 21 | 854 | -- | -- |
| 30.26 | 0.256 | 12.4 | -- | 0.262 | 0.629 | -- | -- | 0.186 | 22.7 | 21 | 2490 | -- | -- |
| 39.49 | 0.294 | 12.3 | 0.598 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 42.85 | 0.306 | 12.3 | -- | 0.312 | -- | -- | -- | 0.328 | 23.1 | -- | -- | -- | -- |
| 34.46 | 0.273 | 12.4 | -- | -- | 0.679 | -- | -- | 0.178 | -- | 21.06 | 2284 | -- | -- |
| 48.92 | 0.326 | 12.3 | -- | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.46 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 26.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 3 | 26.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 4 | 26.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 5 | 26.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 8 | 27.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 12 | 27.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 13 | 27.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 14 | 27.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 17 | 27.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 26 | 27.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 40 | 27.12 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 20 |
| 41 | 27.12 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 53 | 27.16 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 122 | 27.28 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 22 |
| 124 | 27.29 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 150 | 27.32 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 159 | 27.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 248 | 27.45 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 249 | 27.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 307 | 27.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 321 | 27.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 373 | 27.55 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 407 | 27.59 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 433 | 27.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 476 | 27.63 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 479 | 27.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 480 | 27.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 504 | 27.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 593 | 27.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 11 |
| 623 | 27.72 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 696 | 27.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 718 | 27.76 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 730 | 27.77 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 744 | 27.78 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 756 | 27.80 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 758 | 27.80 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 778 | 27.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 897 | 27.90 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 958 | 27.95 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 998 | 27.97 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 7 |