Os05g0380700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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Os05g0380700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.67 | 0.527 | 4.72 | -0.936 | 0.604 | 2.57 | 0.52 | -0.0252 | 0.623 | 1.6 | 18.64 | 1731 | -- | -- |
| 125.66 | 0.522 | 4.72 | -0.927 | 0.602 | 2.57 | 0.538 | -- | 0.624 | 1.64 | 18.7 | 1740 | -- | -- |
| 126.65 | 0.524 | 4.73 | -0.947 | 0.604 | 2.57 | -- | -0.0056 | 0.62 | 1.31 | 18.6 | 1710 | -- | -- |
| 126.65 | 0.524 | 4.73 | -0.944 | 0.601 | 2.56 | -- | -- | 0.623 | 1.3 | 18.62 | 1710 | -- | -- |
| 131.78 | 0.535 | 4.72 | -0.955 | -- | 2.56 | -- | 0.0958 | 0.631 | -- | 19.63 | 2423 | -- | -- |
| 289.15 | 0.797 | 4.6 | 0.0136 | 0.628 | -- | 0.453 | -- | 1.19 | 0.745 | -- | -- | -- | -- |
| 289.97 | 0.797 | 4.6 | -0.00262 | 0.626 | -- | -- | -- | 1.19 | 0.568 | -- | -- | -- | -- |
| 131.76 | 0.535 | 4.72 | -0.978 | -- | 2.55 | -- | -- | 0.624 | -- | 19.74 | 2422 | -- | -- |
| 145.33 | 0.561 | 4.69 | -- | 0.604 | 1.99 | -- | -- | 0.822 | 0.307 | 20.62 | 1521 | -- | -- |
| 314.58 | 0.829 | 4.59 | 0.0193 | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
| 289.98 | 0.797 | 4.6 | -- | 0.626 | -- | -- | -- | 1.19 | 0.568 | -- | -- | -- | -- |
| 148.27 | 0.567 | 4.68 | -- | -- | 2.23 | -- | -- | 0.807 | -- | 21.08 | 1095 | -- | -- |
| 314.59 | 0.828 | 4.59 | -- | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 11 | 127.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 22 |
| 30 | 127.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 32 | 127.46 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 34 | 127.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 38 | 127.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 41 | 127.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 107 | 128.21 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 393 | 130.21 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 555 | 131.06 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 569 | 131.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 811 | 132.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 816 | 132.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 8 |