Os05g0376200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cell division control protein 48 homolog B (AtCDC48b).
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Os05g0376200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cell division control protein 48 homolog B (AtCDC48b).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.92 | 0.335 | 6.43 | 0.432 | 0.296 | 0.784 | -0.297 | 0.457 | 0.101 | 11.4 | 24.56 | 26 | -- | -- |
| 51.18 | 0.336 | 6.42 | 0.498 | 0.293 | 0.735 | -0.434 | -- | 0.114 | 11.3 | 24.6 | 25 | -- | -- |
| 51.2 | 0.333 | 6.44 | 0.39 | 0.301 | 0.805 | -- | 0.68 | 0.0916 | 11.5 | 24.5 | 17 | -- | -- |
| 51.98 | 0.336 | 6.42 | 0.48 | 0.297 | 0.737 | -- | -- | 0.112 | 11.5 | 24.6 | 16 | -- | -- |
| 56.21 | 0.349 | 6.44 | 0.374 | -- | 0.645 | -- | 0.597 | 0.0681 | -- | 24.2 | 70 | -- | -- |
| 59.18 | 0.361 | 6.45 | 0.328 | 0.178 | -- | -0.466 | -- | -0.0203 | 10.2 | -- | -- | -- | -- |
| 60.04 | 0.363 | 6.46 | 0.31 | 0.18 | -- | -- | -- | -0.0213 | 10.3 | -- | -- | -- | -- |
| 56.75 | 0.351 | 6.44 | 0.426 | -- | 0.574 | -- | -- | 0.0739 | -- | 24.57 | 60 | -- | -- |
| 57.56 | 0.355 | 6.44 | -- | 0.261 | 0.555 | -- | -- | 0.0313 | 11.2 | 24.6 | 16 | -- | -- |
| 62.02 | 0.368 | 6.46 | 0.307 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 62.57 | 0.37 | 6.46 | -- | 0.179 | -- | -- | -- | -0.0558 | 10.1 | -- | -- | -- | -- |
| 61.38 | 0.365 | 6.45 | -- | -- | 0.418 | -- | -- | 0.00859 | -- | 24.6 | 35 | -- | -- |
| 64.51 | 0.375 | 6.47 | -- | -- | -- | -- | -- | -0.0558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 2 | 49.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 7 | 49.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 13 | 49.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 14 | 49.81 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 21 | 50.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 22 | 50.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 25 | 50.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 32 | 50.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 34 | 50.27 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 11 |
| 46 | 50.43 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 58 | 50.56 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 68 | 50.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 74 | 50.69 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 85 | 50.78 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 113 | 50.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 120 | 50.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 127 | 50.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 143 | 50.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 146 | 50.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 207 | 51.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 216 | 51.12 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 223 | 51.12 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 234 | 51.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 235 | 51.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 244 | 51.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 245 | 51.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 249 | 51.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 257 | 51.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 265 | 51.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 266 | 51.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 416 | 51.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 417 | 51.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 440 | 51.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 456 | 51.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 482 | 51.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 580 | 51.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 603 | 51.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 624 | 51.72 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 631 | 51.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 635 | 51.73 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 640 | 51.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 672 | 51.78 | temperature | 25 | 30 | < th | dose dependent | sin | 15 | NA |
| 681 | 51.79 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 2 |
| 682 | 51.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 748 | 51.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 764 | 51.90 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 797 | 51.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 825 | 51.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 16 |
| 835 | 51.99 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 876 | 52.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 939 | 52.11 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 983 | 52.15 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 990 | 52.16 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |