Os05g0365700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 1 protein.
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Os05g0365700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.81 | 0.546 | 5.38 | 2.07 | 0.661 | 0.643 | 0.372 | -0.503 | 1.2 | 7.89 | 21.5 | 882 | -- | -- |
| 135.43 | 0.542 | 5.37 | 2.2 | 0.664 | 0.68 | 0.554 | -- | 1.23 | 7.96 | 21.47 | 881 | -- | -- |
| 135.13 | 0.541 | 5.38 | 2.08 | 0.668 | 0.63 | -- | -0.543 | 1.21 | 7.71 | 21.6 | 881 | -- | -- |
| 136.3 | 0.544 | 5.37 | 2.21 | 0.665 | 0.673 | -- | -- | 1.23 | 7.8 | 21.44 | 880 | -- | -- |
| 155.74 | 0.581 | 5.4 | 2.05 | -- | 0.603 | -- | -0.609 | 1.2 | -- | 21.74 | 1270 | -- | -- |
| 151.2 | 0.576 | 5.33 | 2.46 | 0.577 | -- | 0.458 | -- | 1.43 | 7.49 | -- | -- | -- | -- |
| 151.72 | 0.577 | 5.33 | 2.47 | 0.581 | -- | -- | -- | 1.42 | 7.28 | -- | -- | -- | -- |
| 156.57 | 0.583 | 5.38 | 2.21 | -- | 0.643 | -- | -- | 1.24 | -- | 21.64 | 1294 | -- | -- |
| 157.53 | 0.585 | 5.49 | -- | 0.584 | 1.98 | -- | -- | 0.686 | 7.45 | 18.4 | 47520 | -- | -- |
| 169.61 | 0.609 | 5.34 | 2.48 | -- | -- | -- | -- | 1.43 | -- | -- | -- | -- | -- |
| 312.04 | 0.826 | 5.39 | -- | 0.606 | -- | -- | -- | 1.15 | 7.01 | -- | -- | -- | -- |
| 175.75 | 0.617 | 5.51 | -- | -- | 1.99 | -- | -- | 0.689 | -- | 18.33 | 47520 | -- | -- |
| 331.39 | 0.85 | 5.4 | -- | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.89 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 2 | 136.98 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 3 | 137.00 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 6 | 137.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 8 | 137.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 17 |
| 13 | 137.42 | temperature | 25.0 | 720 | < th | dose independent | sin | 23 | NA |
| 18 | 137.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 5 | 16 |
| 20 | 137.54 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 26 | 137.62 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 19 |
| 32 | 137.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 43 | 137.79 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 44 | 137.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 46 | 137.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 48 | 137.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 57 | 137.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 63 | 137.97 | temperature | 25.0 | 720 | > th | dose independent | sin | 22 | NA |
| 70 | 138.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 78 | 138.07 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 119 | 138.28 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 131 | 138.33 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 133 | 138.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 164 | 138.45 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 230 | 138.60 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 232 | 138.60 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 234 | 138.60 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 256 | 138.65 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 265 | 138.66 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 270 | 138.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 361 | 138.82 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 376 | 138.86 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 433 | 138.94 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 448 | 138.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 551 | 139.10 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 641 | 139.20 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 698 | 139.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 759 | 139.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 763 | 139.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 773 | 139.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 775 | 139.36 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 15 |
| 790 | 139.37 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 793 | 139.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 842 | 139.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 850 | 139.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 856 | 139.45 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 905 | 139.50 | temperature | 30.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 926 | 139.52 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 2 |