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Os05g0365000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0204) R2 : 0.844
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.46 (0.0532) R2dC : 0.739 R2C : 0.69
β3 : -0.797 (0.0398) R2dE : 0.143 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.129 (0.0434) R2dN8 : 0.00396 R2N8 : 0.00495
σ : 0.381
deviance : 66.75
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C
peak time of C : 6.28
E
wheather : temperature
threshold : 20.2
memory length : 95
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.3
open length of G : 18.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.85 0.372 12.9 -0.0426 2.46 -0.77 0.954 0.52 -0.116 6.33 20.2 96 15.2 18.3
64.26 0.373 12.9 -0.143 2.45 -0.769 0.905 -- -0.131 6.32 20.2 101 15.2 18.2
65.06 0.376 12.9 -0.0406 2.46 -0.78 -- 0.468 -0.118 6.32 20.21 99 15.2 18.2
66.27 0.379 12.9 -0.141 2.46 -0.782 -- -- -0.141 6.3 20.2 101 15.2 18.2
240.4 0.722 12.8 0.479 -- -1.78 -- 3.36 0.136 -- 25.71 118 15.2 15.7
102.87 0.475 12.9 -0.31 2.45 -- 0.997 -- -0.308 7.11 -- -- -- --
105.49 0.481 12.9 -0.29 2.45 -- -- -- -0.31 7.11 -- -- -- --
206.14 0.669 12.9 0.132 -- -2.09 -- -- 0.108 -- 26.39 200 14.2 16.6
66.75 0.381 12.9 -- 2.46 -0.797 -- -- -0.129 6.28 20.2 95 15.3 18.2
421.45 0.959 13 -0.243 -- -- -- -- -0.267 -- -- -- -- --
107.71 0.485 12.9 -- 2.44 -- -- -- -0.278 7.12 -- -- -- --
184.94 0.633 12.9 -- -- -2.06 -- -- 0.0694 -- 26.29 276 13.2 17.1
423.01 0.96 12.9 -- -- -- -- -- -0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.34 temperature 10.0 270 > th dose dependent rect. 13 20
2 64.74 temperature 20.0 90 > th dose independent rect. 15 18
5 65.01 temperature 20.0 270 > th dose independent rect. 13 19
10 65.86 temperature 20.0 10 > th dose independent rect. 16 18
35 68.25 temperature 15.0 10 > th dose dependent rect. 16 18
119 72.58 temperature 30.0 270 < th dose dependent rect. 8 19
143 73.36 temperature 20.0 270 > th dose independent rect. 13 7
166 74.01 temperature 10.0 270 > th dose dependent rect. 13 8
241 75.72 temperature 20.0 10 > th dose independent rect. 24 10
245 75.77 temperature 10.0 270 > th dose dependent rect. 3 16
259 76.03 radiation 1.0 270 > th dose independent rect. 14 17
276 76.39 wind 1.0 270 > th dose independent rect. 8 5
278 76.39 radiation 1.0 270 < th dose dependent sin 14 NA
287 76.52 temperature 10.0 90 > th dose dependent rect. 15 6
294 76.63 temperature 10.0 270 > th dose independent rect. 8 6
295 76.63 atmosphere 995.0 270 > th dose independent rect. 8 6
296 76.63 atmosphere 1015.0 270 < th dose independent rect. 8 6
297 76.63 temperature 10.0 270 > th dose independent rect. 14 18
306 76.77 precipitation 0.1 270 < th dose independent rect. 8 6
307 76.77 precipitation 0.1 270 < th dose dependent rect. 8 6
312 76.83 temperature 10.0 270 > th dose independent rect. 9 4
313 76.83 atmosphere 995.0 270 > th dose independent rect. 9 4
314 76.83 atmosphere 1015.0 270 < th dose independent rect. 9 4
315 76.83 temperature 10.0 270 > th dose independent rect. 13 20
318 76.89 wind 9.0 270 < th dose independent rect. 14 18
319 76.90 precipitation 0.1 270 < th dose independent rect. 9 4
320 76.90 precipitation 0.1 270 < th dose dependent rect. 9 4
321 76.90 temperature 10.0 270 > th dose dependent rect. 23 10
337 77.07 precipitation 0.1 270 < th dose independent rect. 19 18
339 77.07 precipitation 0.1 270 < th dose dependent rect. 19 18
341 77.11 temperature 10.0 270 > th dose independent rect. 13 6
343 77.11 atmosphere 1010.0 270 < th dose independent rect. 13 6
345 77.11 temperature 10.0 270 > th dose independent rect. 19 18
346 77.11 atmosphere 995.0 270 > th dose independent rect. 19 18
347 77.11 radiation 1.0 270 > th dose independent rect. 13 19
353 77.16 wind 9.0 270 < th dose independent rect. 8 6
355 77.17 wind 9.0 270 < th dose independent rect. 13 20
361 77.18 wind 1.0 270 > th dose independent rect. 19 18
373 77.25 radiation 1.0 270 > th dose independent rect. 9 4
378 77.27 wind 9.0 270 < th dose independent rect. 13 6
381 77.29 radiation 1.0 270 > th dose independent rect. 8 6
387 77.34 atmosphere 995.0 270 > th dose dependent rect. 9 4
398 77.40 wind 9.0 270 < th dose independent rect. 9 4
425 77.61 wind 9.0 270 < th dose independent rect. 19 18
431 77.69 atmosphere 1010.0 270 < th dose independent rect. 14 18
435 77.71 temperature 15.0 270 > th dose independent rect. 3 15
436 77.71 atmosphere 1010.0 270 < th dose independent rect. 13 20
453 77.87 radiation 1.0 270 < th dose independent sin 13 NA
454 77.88 temperature 10.0 10 > th dose dependent rect. 24 10
457 77.90 precipitation 0.1 270 < th dose independent rect. 13 6
459 77.90 precipitation 0.1 270 < th dose dependent rect. 13 6
460 77.90 radiation 1.0 270 < th dose dependent rect. 18 9
467 77.99 wind 1.0 270 > th dose independent rect. 13 6
472 78.00 precipitation 0.1 270 < th dose independent rect. 18 9
473 78.00 precipitation 0.1 270 < th dose dependent rect. 18 9
476 78.03 radiation 1.0 270 > th dose independent sin 14 NA
493 78.11 atmosphere 995.0 270 > th dose dependent rect. 8 6
503 78.17 radiation 40.0 270 < th dose independent rect. 14 18
507 78.21 humidity 50.0 270 > th dose independent rect. 8 5
521 78.29 wind 9.0 270 < th dose independent rect. 3 15
525 78.32 radiation 1.0 270 < th dose independent rect. 18 9
526 78.32 precipitation 0.1 270 < th dose independent rect. 14 18
529 78.32 precipitation 0.1 270 < th dose dependent rect. 14 18
548 78.41 temperature 30.0 270 < th dose dependent rect. 18 9
551 78.42 wind 9.0 270 < th dose independent rect. 18 9
558 78.46 temperature 10.0 270 > th dose independent rect. 18 9
559 78.46 humidity 50.0 270 > th dose independent rect. 18 9
560 78.46 radiation 20.0 270 < th dose independent rect. 18 9
564 78.46 atmosphere 1015.0 270 < th dose independent rect. 3 15
565 78.46 humidity 50.0 270 > th dose independent rect. 19 18
571 78.50 atmosphere 995.0 270 > th dose independent rect. 18 9
594 78.59 atmosphere 995.0 270 > th dose independent rect. 14 18
604 78.63 radiation 40.0 90 < th dose independent rect. 15 6
611 78.68 atmosphere 995.0 10 > th dose dependent rect. 10 6
613 78.69 precipitation 0.1 270 < th dose independent rect. 9 14
614 78.69 precipitation 0.1 270 < th dose dependent rect. 9 14
620 78.74 wind 1.0 270 > th dose independent rect. 14 4
625 78.77 temperature 10.0 10 > th dose independent rect. 10 6
627 78.77 atmosphere 1015.0 10 < th dose independent rect. 10 6
628 78.77 precipitation 0.1 10 < th dose independent rect. 10 6
630 78.77 atmosphere 1015.0 10 < th dose independent rect. 16 18
633 78.77 precipitation 0.1 10 < th dose dependent rect. 10 6
636 78.79 atmosphere 1015.0 270 < th dose independent rect. 23 10
659 78.89 humidity 60.0 270 > th dose independent rect. 23 10
662 78.90 atmosphere 995.0 270 > th dose independent rect. 13 6
672 78.93 atmosphere 995.0 270 > th dose independent rect. 23 10
673 78.93 temperature 10.0 270 > th dose independent rect. 9 14
678 78.96 wind 9.0 270 < th dose independent rect. 23 10
681 79.00 humidity 90.0 270 < th dose independent rect. 14 4
690 79.02 temperature 15.0 270 > th dose dependent sin 17 NA
691 79.03 atmosphere 995.0 10 > th dose independent rect. 10 6
694 79.03 temperature 30.0 10 < th dose dependent rect. 21 19
708 79.12 wind 9.0 10 < th dose independent rect. 16 18
736 79.23 wind 1.0 10 > th dose independent rect. 10 6
741 79.24 radiation 40.0 270 < th dose independent rect. 14 4
742 79.24 radiation 1.0 10 > th dose independent rect. 10 6
743 79.24 temperature 30.0 270 < th dose independent rect. 18 9
758 79.26 precipitation 0.1 270 < th dose independent rect. 3 15
760 79.26 precipitation 0.1 270 < th dose dependent rect. 3 15
763 79.28 temperature 30.0 270 < th dose independent rect. 9 4
790 79.37 atmosphere 995.0 10 > th dose independent rect. 16 18
794 79.38 wind 1.0 270 > th dose independent rect. 18 9
797 79.38 temperature 15.0 10 > th dose dependent sin 12 NA
803 79.39 humidity 90.0 270 < th dose independent rect. 13 6
819 79.42 radiation 40.0 270 < th dose independent rect. 23 10
827 79.44 temperature 20.0 10 > th dose independent rect. 24 21
832 79.45 temperature 30.0 270 < th dose independent rect. 19 18
855 79.50 temperature 10.0 10 > th dose dependent rect. 15 7
862 79.52 precipitation 0.1 270 < th dose independent rect. 23 10
865 79.52 precipitation 0.1 270 < th dose dependent rect. 23 10
888 79.59 humidity 90.0 270 < th dose independent rect. 15 2
890 79.60 wind 9.0 10 < th dose independent rect. 10 6
975 79.81 temperature 25.0 1440 < th dose dependent rect. 24 11
978 79.82 atmosphere 995.0 90 > th dose independent rect. 15 6
979 79.82 temperature 20.0 1440 > th dose independent rect. 20 15