BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0365000 Os05g0365000|Os05g0365000
         (353 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02440.1  | chr4:1072555-1073565 FORWARD LENGTH=337            201   4e-52
AT5G15440.1  | chr5:5013158-5014131 FORWARD LENGTH=294             54   1e-07

>AT4G02440.1 | chr4:1072555-1073565 FORWARD LENGTH=337
          Length = 336

 Score =  201 bits (512), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 108/132 (81%), Gaps = 1/132 (0%)

Query: 223 TVGAHLASGSWTLSREQGNKLLASRFRGDRLYICDWPGCVHAEERRKYMVFRGVFHDFPR 282
           ++G+HLASG W LSREQGNKLLASRFRGD LYIC+WPGC+H EE+R YM+FRGVF DF R
Sbjct: 205 SLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKR 264

Query: 283 SQVRRALRD-TRRPTVAVDCAFCGCTEAWDLYAAFCLRSFYGYHDDGEPVVRAYVCENGH 341
           S+V R + D  R  T  + CAFC C E WDL+++FCLR  +G+HDDGEPVVRAYVCENGH
Sbjct: 265 SRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGH 324

Query: 342 VAGAWTERPLYS 353
           V+GAWT  PLY+
Sbjct: 325 VSGAWTALPLYT 336




 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%), Gaps = 1/37 (2%)

Query: 93  PRAWAALHKLSVCCPGLLRAGVLLEPSDDFGLELDIG 129
           P  WA+L+KL+VCCPGL  AG+LLE S DFGLE ++G
Sbjct: 86  PGGWASLYKLAVCCPGLFHAGILLENS-DFGLERELG 121



>AT5G15440.1 | chr5:5013158-5014131 FORWARD LENGTH=294
          Length = 293

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 235 LSREQGNKLLASRFRGDRLYICDWPGCVHAE--ERRKYMVFRGVFHDFPRSQVRRALRDT 292
            SR  G  LL  + R D LY+CD   C H +  E     +FRG+F  FP S+VR+ + + 
Sbjct: 122 FSRTLGRSLLPPQCRTDVLYVCD--PCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINK 179

Query: 293 RRPTVAVD-CAFCGCTEAWDLYAA------FCLRSFYGYHDDGEPVVRAYVCENGHVAGA 345
             P    + C +C   + W +  A       C+R    Y D     +  +VC NGH+ G 
Sbjct: 180 AVPFHPSEVCPYCK-AKLWSMLQAKIIPQSACIR-LEAYED----CIEYFVCLNGHLLGI 233

Query: 346 WTERPL 351
            T  PL
Sbjct: 234 CTLAPL 239



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,989,036
Number of extensions: 156413
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,364,969
Effective search space: 2116337157
Effective search space used: 2116337157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)