Os05g0363500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os05g0363500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.08 | 0.926 | 4.88 | 0.342 | 2.66 | 1.61 | -2.32 | 3.74 | -0.775 | 21.3 | 20.52 | 1412 | -- | -- |
| 407.58 | 0.94 | 5.05 | -0.156 | 2.66 | 1.13 | -2.1 | -- | -1.1 | 21.1 | 22.1 | 1206 | -- | -- |
| 406.4 | 0.939 | 4.88 | 0.529 | 2.68 | 1.53 | -- | 3.67 | -0.74 | 21.3 | 20.8 | 1416 | -- | -- |
| 422.06 | 0.957 | 5.01 | -0.169 | 2.63 | 0.998 | -- | -- | -0.996 | 21.2 | 22.1 | 1201 | -- | -- |
| 767.87 | 1.29 | 4.88 | 0.58 | -- | 1.71 | -- | 2.38 | -1.05 | -- | 21.9 | 775 | -- | -- |
| 442.27 | 0.986 | 4.93 | 0.135 | 2.68 | -- | -2.16 | -- | -0.663 | 21.3 | -- | -- | -- | -- |
| 459.07 | 1 | 4.93 | 0.213 | 2.69 | -- | -- | -- | -0.661 | 21.3 | -- | -- | -- | -- |
| 623.05 | 1.16 | 5.05 | -0.495 | -- | 2.4 | -- | -- | -1.54 | -- | 25.2 | 755 | -- | -- |
| 422.02 | 0.957 | 5 | -- | 2.59 | 0.955 | -- | -- | -0.957 | 21.2 | 22.11 | 1104 | -- | -- |
| 880.43 | 1.39 | 4.86 | 0.226 | -- | -- | -- | -- | -0.672 | -- | -- | -- | -- | -- |
| 460.27 | 1 | 4.94 | -- | 2.69 | -- | -- | -- | -0.685 | 21.3 | -- | -- | -- | -- |
| 627.13 | 1.17 | 5.04 | -- | -- | 2.3 | -- | -- | -1.45 | -- | 25.29 | 722 | -- | -- |
| 881.78 | 1.39 | 4.86 | -- | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 381.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 2 | 381.29 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 32 | 386.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 34 | 386.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 53 | 387.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 68 | 388.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 73 | 388.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 100 | 389.08 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 106 | 389.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 120 | 389.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 136 | 389.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 139 | 389.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 142 | 389.91 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 154 | 390.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 178 | 390.29 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 181 | 390.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 204 | 390.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 221 | 390.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 222 | 390.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 244 | 390.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 264 | 391.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 270 | 391.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 394 | 391.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 400 | 391.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 417 | 392.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 431 | 392.16 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 463 | 392.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 464 | 392.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 518 | 392.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 520 | 392.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 614 | 393.26 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 627 | 393.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 696 | 393.79 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 16 | 3 |
| 821 | 394.52 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 17 | 1 |
| 844 | 394.64 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 846 | 394.65 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 22 |
| 864 | 394.71 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 873 | 394.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 903 | 394.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 912 | 395.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 22 |
| 913 | 395.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 939 | 395.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 942 | 395.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |