BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0363500 Os05g0363500|J090011O08
         (407 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06880.2  | chr3:2170516-2175686 REVERSE LENGTH=1265           210   1e-54

>AT3G06880.2 | chr3:2170516-2175686 REVERSE LENGTH=1265
          Length = 1264

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 176/257 (68%), Gaps = 9/257 (3%)

Query: 153 KAVSKLLVSDGLESYLDAGSEVTTIWHLLNSSSEVRYKSSARQDILDQLLDSISTSKKDK 212
           +++ K ++ +  E Y+   SEVT I+ +LN     +Y S  +  ILDQL  +IS+S++  
Sbjct: 446 QSLIKEVLGNADEKYV---SEVTMIYQMLNRKEGFKY-SMLKDVILDQLFTAISSSEEKT 501

Query: 213 VIRASVYVLLLMLSEDRNAMRGIKRKEFHLSNLASALKRDVHEAAILIYLLDPSPLQIKN 272
           VI+AS+  L  ++S +R A+  +KRK  +LS+LA+ALK++V EAAILIYL+ PSP +IK+
Sbjct: 502 VIKASMTALTKIISVNRTALEEVKRKGLNLSHLANALKQNVQEAAILIYLIKPSPTEIKS 561

Query: 273 LELLPSLLHVACNSDTKKW-----PAVLPLTPTSASIALIEILVTAFDYVTNNVHLGAIS 327
           LELLP+L+ V  ++ +        P+   LTP +AS+ +IE+L+TAFD+ TN +HL AIS
Sbjct: 562 LELLPALVDVVASTSSSSSCYTFIPSPSYLTPPAASLMIIEVLITAFDHATNTMHLAAIS 621

Query: 328 SPHILSKLVDVAKNNNLEEGVALAAILVRCVRLNGNCKKFLSQATPVEPFLHLVRRKEHR 387
           SP +L  L+DVAK+ N  E ++L +ILV+C++ +G  +K++ Q T V PF HL++ K+  
Sbjct: 622 SPSVLCGLLDVAKSGNSGEFISLTSILVKCMQFDGLHRKYIYQHTRVAPFAHLLQSKDQE 681

Query: 388 AKCAALEYFHEILQIPR 404
             C AL++ HE+L+IPR
Sbjct: 682 EICIALQFLHEVLKIPR 698



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,301,179
Number of extensions: 328889
Number of successful extensions: 1065
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,337,553
Effective search space: 2551291218
Effective search space used: 2551291218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)