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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0362600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.032) R2 : 0.448
β1 : 0.528 (0.117) R2dD : 0.0269 R2D : -0.0145
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.38 (0.151) R2dE : 0.464 R2E : -0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.5 (0.668) R2dD*E : 0.526 R2D*E : -0.0235
γ1 : -0.0564 (0.0692) R2dN8 : 0.00116 R2N8 : -0.00843
σ : 0.583
deviance : 156.95
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.713
memory length : 4322
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 4.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
156.05 0.587 3.25 0.518 0.00855 -2.32 0.706 -11.2 -0.06 18.6 6.8 4323 18.3 4
259.48 0.75 3.24 0.394 0.00153 -1.04 -0.495 -- -0.0488 6.48 6.735 4328 18.3 3.92
156.72 0.583 3.25 0.521 0.0708 -2.4 -- -11.5 -0.0542 16.5 6.709 4322 18.3 4.12
239.41 0.721 3.2 0.385 0.036 -0.987 -- -- -0.0108 7.12 6.657 4319 18.6 2.48
156.95 0.583 3.25 0.528 -- -2.38 -- -11.5 -0.0564 -- 6.713 4322 18.3 4.14
278.12 0.782 3.17 0.247 0.18 -- -0.016 -- -0.145 11.9 -- -- -- --
278.12 0.781 3.17 0.246 0.18 -- -- -- -0.145 12 -- -- -- --
239.31 0.72 3.19 0.381 -- -0.979 -- -- -0.00606 -- 6.653 4319 18.5 2.5
240.35 0.722 3.16 -- 0.126 -1.02 -- -- 0.00575 10.3 6.605 4319 18.6 2.48
280.16 0.782 3.18 0.241 -- -- -- -- -0.147 -- -- -- -- --
279.72 0.782 3.18 -- 0.177 -- -- -- -0.172 11.9 -- -- -- --
204.32 0.666 3.17 -- -- -1.07 -- -- -0.0749 -- 6.6 4333 20.3 0.434
281.69 0.783 3.18 -- -- -- -- -- -0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.42 wind 7 4320 < th dose independent rect. 18 4
5 166.81 wind 7 4320 > th dose independent rect. 18 4
6 166.88 wind 7 4320 < th dose independent rect. 18 9
8 167.18 wind 5 4320 > th dose dependent rect. 19 3
28 170.09 humidity 90 1440 < th dose dependent rect. 3 1
29 170.29 wind 7 4320 > th dose independent rect. 18 9
33 170.57 wind 7 4320 > th dose dependent rect. 18 9
42 172.05 wind 9 4320 > th dose dependent rect. 20 2
92 173.65 wind 5 4320 > th dose independent rect. 21 1
143 177.33 humidity 90 1440 < th dose dependent rect. 2 5
165 182.62 atmosphere 995 14400 > th dose independent rect. 18 1
168 183.14 atmosphere 995 14400 < th dose independent rect. 17 1
175 183.14 atmosphere 995 14400 < th dose dependent rect. 17 1
210 184.91 humidity 80 1440 < th dose independent rect. 22 1
252 186.00 atmosphere 995 14400 > th dose independent rect. 8 11
269 186.22 atmosphere 995 14400 > th dose independent rect. 10 9
465 190.23 atmosphere 995 14400 > th dose independent rect. 19 21
478 190.29 wind 7 4320 < th dose independent rect. 8 1
483 190.36 humidity 60 1440 > th dose dependent rect. 2 5
520 190.85 atmosphere 995 14400 > th dose independent sin 4 NA
539 191.01 atmosphere 995 14400 < th dose dependent sin 0 NA
554 191.13 atmosphere 995 14400 > th dose independent sin 22 NA
561 191.25 atmosphere 995 14400 < th dose independent sin 22 NA
572 191.31 atmosphere 995 14400 < th dose independent sin 3 NA
577 191.31 humidity 70 1440 > th dose dependent rect. 3 1
614 191.61 wind 7 1440 > th dose independent rect. 8 1
667 192.02 humidity 80 270 < th dose dependent rect. 23 8
681 192.10 humidity 90 1440 < th dose dependent rect. 5 1
799 192.49 atmosphere 995 14400 > th dose independent no NA NA
807 192.50 atmosphere 995 14400 > th dose independent rect. 10 23
808 192.50 atmosphere 995 14400 > th dose independent rect. 12 23
809 192.50 atmosphere 995 14400 > th dose independent rect. 14 23
983 192.93 atmosphere 995 14400 < th dose independent no NA NA