BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0362600 Os05g0362600|Os05g0362600
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02380.1  | chr4:1046414-1046807 REVERSE LENGTH=98              53   5e-08
AT1G02820.1  | chr1:623933-624304 REVERSE LENGTH=92                46   6e-06

>AT4G02380.1 | chr4:1046414-1046807 REVERSE LENGTH=98
          Length = 97

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 110 WEPDPDTGYYRPVTGTKEVDAADLRAEMLKQRM 142
           W PDP TGYYRP TG+ E+DAA+LRA +L  + 
Sbjct: 65  WVPDPKTGYYRPETGSNEIDAAELRAALLNNKQ 97



>AT1G02820.1 | chr1:623933-624304 REVERSE LENGTH=92
          Length = 91

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 110 WEPDPDTGYYRPVTGTKEVDAADLRAEMLKQRM 142
           W PDP TGYYRP T ++E+D A+LRA +L  + 
Sbjct: 59  WVPDPKTGYYRPETVSEEIDPAELRAILLNNKQ 91



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,442,783
Number of extensions: 69077
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)