Os05g0357600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Developmentally regulated GTP binding protein.
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Os05g0357600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Developmentally regulated GTP binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.86 | 0.22 | 11 | -0.0462 | 0.232 | 0.555 | -0.0146 | 0.276 | -0.0833 | 0.19 | 29.6 | 1754 | -- | -- |
| 21.88 | 0.218 | 11 | -0.00807 | 0.228 | 0.582 | -0.0323 | -- | -0.0786 | 0.186 | 29.6 | 1748 | -- | -- |
| 21.86 | 0.218 | 11 | -0.0459 | 0.232 | 0.553 | -- | 0.277 | -0.0831 | 0.197 | 29.6 | 1748 | -- | -- |
| 21.87 | 0.218 | 11 | 0.00433 | 0.232 | 0.582 | -- | -- | -0.0765 | 0.156 | 29.7 | 1748 | -- | -- |
| 25.24 | 0.234 | 11 | -0.0246 | -- | 0.547 | -- | 0.16 | -0.0749 | -- | 29.7 | 1723 | -- | -- |
| 33.65 | 0.272 | 11 | -0.153 | 0.222 | -- | -0.0829 | -- | -0.0607 | 1.06 | -- | -- | -- | -- |
| 33.68 | 0.272 | 11 | -0.15 | 0.222 | -- | -- | -- | -0.0602 | 1.01 | -- | -- | -- | -- |
| 24.7 | 0.231 | 11 | 0.0194 | -- | 0.528 | -- | -- | -0.0701 | -- | 29.79 | 6055 | -- | -- |
| 21.87 | 0.218 | 11 | -- | 0.232 | 0.582 | -- | -- | -0.0761 | 0.169 | 29.6 | 1748 | -- | -- |
| 36.74 | 0.283 | 11 | -0.141 | -- | -- | -- | -- | -0.0559 | -- | -- | -- | -- | -- |
| 34.27 | 0.274 | 11 | -- | 0.219 | -- | -- | -- | -0.0435 | 0.986 | -- | -- | -- | -- |
| 24.66 | 0.231 | 11 | -- | -- | 0.522 | -- | -- | -0.0713 | -- | 29.8 | 6048 | -- | -- |
| 37.27 | 0.285 | 11 | -- | -- | -- | -- | -- | -0.0402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 3 | 21.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 21.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 10 | 22.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 11 | 22.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 12 | 22.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 13 | 22.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 22 | 22.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 33 | 22.10 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 68 | 22.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 87 | 22.21 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 99 | 22.25 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 109 | 22.30 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 111 | 22.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 130 | 22.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 189 | 22.42 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 199 | 22.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 200 | 22.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 203 | 22.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 20 |
| 246 | 22.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 296 | 22.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 20 |
| 313 | 22.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 325 | 22.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 380 | 22.54 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 557 | 22.63 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 607 | 22.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 609 | 22.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 621 | 22.68 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 772 | 22.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 795 | 22.74 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 941 | 22.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 957 | 22.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |