Os05g0357100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3'-5' exonuclease domain containing protein.
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Os05g0357100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3'-5' exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.36 | 0.416 | 10.8 | -0.279 | 0.0906 | -0.642 | -0.407 | 0.342 | -0.0887 | 0.57 | 20.42 | 249 | -- | -- |
| 78.46 | 0.413 | 10.8 | -0.326 | 0.0862 | -0.643 | -0.426 | -- | -0.0998 | 0.484 | 19.85 | 250 | -- | -- |
| 78.98 | 0.414 | 10.8 | -0.229 | 0.0936 | -0.65 | -- | 0.531 | -0.0751 | 1.41 | 19.67 | 229 | -- | -- |
| 79.22 | 0.415 | 10.8 | -0.32 | 0.0974 | -0.631 | -- | -- | -0.11 | 1.93 | 18.55 | 247 | -- | -- |
| 79.17 | 0.414 | 10.8 | -0.145 | -- | -0.727 | -- | 0.888 | -0.0441 | -- | 20 | 141 | -- | -- |
| 85.02 | 0.432 | 10.8 | -0.475 | 0.312 | -- | -0.26 | -- | -0.214 | 3.49 | -- | -- | -- | -- |
| 85.21 | 0.432 | 10.8 | -0.47 | 0.313 | -- | -- | -- | -0.212 | 3.71 | -- | -- | -- | -- |
| 79.54 | 0.415 | 10.8 | -0.286 | -- | -0.714 | -- | -- | -0.0948 | -- | 18.4 | 141 | -- | -- |
| 81.63 | 0.421 | 10.8 | -- | 0.0639 | -0.778 | -- | -- | -0.056 | 0.171 | 17.9 | 248 | -- | -- |
| 90.65 | 0.445 | 10.8 | -0.457 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 91.03 | 0.446 | 10.8 | -- | 0.304 | -- | -- | -- | -0.16 | 3.72 | -- | -- | -- | -- |
| 81.73 | 0.421 | 10.8 | -- | -- | -0.815 | -- | -- | -0.0497 | -- | 17.9 | 140 | -- | -- |
| 96.16 | 0.458 | 10.8 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.72 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 2 | 64.76 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 64.98 | humidity | 60.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 4 | 65.00 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 6 | 65.57 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 8 | 66.40 | wind | 5.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 66.75 | radiation | 10.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 13 | 67.23 | wind | 7.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 24 | 69.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 25 | 69.33 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 39 | 70.77 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 40 | 70.78 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 45 | 70.92 | humidity | 80.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 52 | 71.02 | wind | 9.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 54 | 71.02 | temperature | 10.0 | 30 | > th | dose independent | rect. | 16 | 1 |
| 56 | 71.02 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 58 | 71.02 | radiation | 40.0 | 30 | < th | dose independent | rect. | 16 | 1 |
| 59 | 71.02 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 1 |
| 60 | 71.02 | temperature | 10.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 61 | 71.02 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 79 | 71.52 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 83 | 71.70 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 85 | 71.76 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 88 | 71.84 | wind | 9.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 89 | 71.91 | radiation | 20.0 | 90 | > th | dose independent | rect. | 16 | 15 |
| 91 | 71.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 95 | 71.94 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 101 | 71.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 118 | 72.03 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 16 | 1 |
| 186 | 72.87 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 193 | 73.40 | wind | 9.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 195 | 73.61 | temperature | 30.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 196 | 73.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 197 | 73.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 218 | 74.69 | humidity | 50.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 274 | 76.10 | radiation | 10.0 | 90 | > th | dose independent | sin | 13 | NA |
| 322 | 76.73 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 327 | 76.82 | radiation | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 348 | 77.13 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 349 | 77.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 354 | 77.17 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 358 | 77.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 372 | 77.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 373 | 77.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 383 | 77.30 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 396 | 77.37 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 402 | 77.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 406 | 77.42 | radiation | 20.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 424 | 77.43 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 445 | 77.50 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 448 | 77.50 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 449 | 77.50 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 477 | 77.56 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 479 | 77.56 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 491 | 77.57 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 493 | 77.57 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 494 | 77.58 | temperature | 30.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 495 | 77.58 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 501 | 77.59 | temperature | 30.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 507 | 77.59 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 509 | 77.60 | temperature | 30.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 513 | 77.60 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 561 | 77.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 688 | 77.67 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 693 | 77.67 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 751 | 77.72 | radiation | 10.0 | 270 | > th | dose dependent | sin | 13 | NA |