BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0357100 Os05g0357100|AK102042
         (580 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56310.1  | chr1:21082863-21085564 FORWARD LENGTH=590          481   e-136
AT4G13870.2  | chr4:8023563-8025542 REVERSE LENGTH=289             55   1e-07

>AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590
          Length = 589

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/577 (42%), Positives = 369/577 (63%), Gaps = 24/577 (4%)

Query: 1   MGCSKTQTQEDSEFNQCNEERSLCLHSFSDLSHVSAATFMYLLKDCYLYGTDKATPKFKI 60
           MG    +   +   ++ +E  ++CLH+FSDL++VS   F+YLLK+CY +G+ KAT KF+ 
Sbjct: 1   MGLDSKEADLEVIRDEKSEANTVCLHAFSDLTYVSPVVFLYLLKECYKHGSLKATKKFQA 60

Query: 61  LQLQVKRVLNNDPQPGPFTYVVQCMYIVPLLGKTHAEGFSHMLISSLRHL-KSVE--SVQ 117
           LQ QV RVL N PQPGP T+++ C+ ++PL G  + EGFSH++IS+LR   K+V   + +
Sbjct: 61  LQYQVHRVLANKPQPGPATFIINCLTLLPLFG-VYGEGFSHLVISALRRFFKTVSEPTSE 119

Query: 118 KDFLDAKHLAARLILDIVASIVPHEERILIKLLEAYDIELRDMADALYGSELGDE-DLVK 176
           +D   A+ LAA+  L  V   + ++E++++  L  +D+ L  + +AL  SE+        
Sbjct: 120 EDICLARKLAAQFFLATVGGSLTYDEKVMVHTLRVFDVRLTSIDEALSISEVWQRYGFAC 179

Query: 177 AKEHLKQYVQCLMESESYVTAVNLITRFSIQCYDESFLTKLIENNHLEAAEKWAVFMGNE 236
               L+QY+  L++S+S++TAV L+  FS +   E+FL +++E+ + +AAE+WA FMG  
Sbjct: 180 GNAFLEQYISDLIKSKSFMTAVTLLEHFSFRFPGETFLQQMVEDKNFQAAERWATFMGRP 239

Query: 237 MICLIIQTYLDIKMLKRANELVKQHDLTEKFPDVNYLYKESVLKKLAEKGCWDIAEVRAK 296
            +C+++Q Y    MLK+A  ++ ++ L   FP++ +  KES LK LAEK CWD+AE++ K
Sbjct: 240 SLCILVQEYGSRNMLKQAYNIINKNYLQHDFPELYHKCKESALKVLAEKACWDVAEIKTK 299

Query: 297 KETKLMEYLVYLAMEAGYMEKVEELCQRYSLEGYVNSLGNHKHQRYLSYINICSPAVPEE 356
            + +L++YLVYLA+EAGY+EKV+ELC RYSL+G   +      +  ++++          
Sbjct: 300 GDRQLLKYLVYLAVEAGYLEKVDELCDRYSLQGLPKA-----REAEVAFVE--------- 345

Query: 357 ICCGSDYXXXXXXXXXXXXWVDEIDGLLNSISYIEACKIIGVDCEWKPNFEKGSKPNKVS 416
                 +            WVDE++ L  + S++E C+++G+DCEWKPN+ KGSK NKVS
Sbjct: 346 ----KSFLRLNDLAVEDVVWVDEVNELRKATSFLEGCRVVGIDCEWKPNYIKGSKQNKVS 401

Query: 417 IIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNILKLGYNLQCDLHQLSQSYGEL 476
           I+QI SD K FI DLIKLY D  ++LD+C   I+ S + LKLGYN QCD+ QL+ SYG+L
Sbjct: 402 IMQIGSDTKIFILDLIKLYNDASEILDNCLSHILQSKSTLKLGYNFQCDIKQLALSYGDL 461

Query: 477 KCFQSYEMLLDIQKLFKGTTXXXXXXXXXXXXXXXNKTRRNSNWEQRPLTQNQKEYAALD 536
           KCF+ Y+MLLDIQ +F                   NKTRRNS+WEQRPL+QNQ EYAALD
Sbjct: 462 KCFERYDMLLDIQNVFNEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALD 521

Query: 537 AVVLVHIFHHVKGQPQFGVTEGCKVEWKSHIVSRVKN 573
           A VL+HIF HV+  P    +     +WKSHIVS +++
Sbjct: 522 AAVLIHIFRHVRDHPPHDSSSET-TQWKSHIVSHMES 557



>AT4G13870.2 | chr4:8023563-8025542 REVERSE LENGTH=289
          Length = 288

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 396 IGVDCEWKPNFEKGSKPNKVSIIQIASDKKAFIFDLIKLYEDDPKVLDSCFRRIMCSSNI 455
           +G+D EW+P+F KG  P KV+ +QI  D      D++ ++      +    + ++  S +
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSN--YCDVMHIFHSG---IPQSLQHLIEDSTL 184

Query: 456 LKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDI--QKLF---KGTTXXXXXXXXXXXXXX 510
           +K+G  +  D  +L   YG     +  E L D+  QK+    K                 
Sbjct: 185 VKVGIGIDGDSVKLFHDYG--VSIKDVEDLSDLANQKIGGDKKWGLASLTETLVCKELLK 242

Query: 511 XNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQP 551
            N+ R   NWE  PL++ Q +YAA DA    H++  +K  P
Sbjct: 243 PNRIRLG-NWEFYPLSKQQLQYAATDAYASWHLYKVLKDLP 282



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,148,981
Number of extensions: 494055
Number of successful extensions: 1176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 2
Length of query: 580
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 476
Effective length of database: 8,255,305
Effective search space: 3929525180
Effective search space used: 3929525180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)