Os05g0349800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Embryonic abundant protein 1.
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Os05g0349800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Embryonic abundant protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.65 | 0.739 | 3.2 | -0.426 | 0.377 | 8.78 | -0.281 | -19.3 | 0.14 | 5.99 | 0.6734 | 11 | 11.8 | -- |
| 281.34 | 0.787 | 3.16 | -0.351 | 0.429 | 1.24 | -0.585 | -- | 0.0927 | 5.39 | 0.6734 | 11 | 11.8 | -- |
| 246.04 | 0.736 | 3.21 | -0.439 | 0.387 | 7.53 | -- | -17.9 | 0.12 | 5.91 | 0.6808 | 11 | 11.7 | -- |
| 275.93 | 0.779 | 3.15 | -0.367 | 0.389 | 1.41 | -- | -- | 0.11 | 5.98 | 0.6669 | 12 | 6.63 | -- |
| 253.08 | 0.745 | 3.21 | -0.432 | -- | 7.51 | -- | -17.8 | 0.131 | -- | 0.6932 | 11 | 11.5 | -- |
| 286.67 | 0.794 | 3.16 | -0.291 | 0.443 | -- | -0.532 | -- | 0.0827 | 5.25 | -- | -- | -- | -- |
| 287.36 | 0.794 | 3.16 | -0.291 | 0.441 | -- | -- | -- | 0.0854 | 5.41 | -- | -- | -- | -- |
| 281.06 | 0.781 | 3.15 | -0.388 | -- | 1.71 | -- | -- | 0.119 | -- | 0.1136 | 5 | 3.44 | -- |
| 277.49 | 0.776 | 3.14 | -- | 0.375 | 1.52 | -- | -- | 0.168 | 6.02 | 3.113e-05 | 5 | 4.59 | -- |
| 297.5 | 0.806 | 3.16 | -0.277 | -- | -- | -- | -- | 0.0962 | -- | -- | -- | -- | -- |
| 289.6 | 0.796 | 3.15 | -- | 0.436 | -- | -- | -- | 0.118 | 5.43 | -- | -- | -- | -- |
| 284.26 | 0.785 | 3.15 | -- | -- | 1.58 | -- | -- | 0.167 | -- | 0.09239 | 5 | 3.52 | -- |
| 299.51 | 0.808 | 3.16 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 237.28 | wind | 7.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 2 | 237.28 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 11 | 238.67 | wind | 1.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 16 | 241.48 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 29 | 244.14 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 33 | 245.57 | wind | 1.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 75 | 250.18 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 18 |
| 82 | 251.53 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 15 |
| 90 | 255.71 | wind | 1.0 | 10 | < th | dose dependent | sin | 17 | NA |
| 103 | 261.39 | temperature | 15.0 | 90 | > th | dose independent | rect. | 1 | 23 |
| 111 | 261.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 119 | 264.40 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 120 | 264.40 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 127 | 264.83 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 128 | 264.88 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 134 | 264.99 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 153 | 265.37 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 171 | 265.61 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 197 | 265.84 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 198 | 265.84 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 202 | 265.86 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 209 | 265.98 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 216 | 266.02 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 217 | 266.03 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 3 | NA |
| 218 | 266.03 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 221 | 266.07 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 222 | 266.07 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 227 | 266.11 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 3 | NA |
| 242 | 266.23 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 243 | 266.23 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 258 | 266.41 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 264 | 266.47 | wind | 9.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 273 | 266.53 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 282 | 266.59 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 283 | 266.59 | temperature | 15.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 284 | 266.60 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 4 | NA |
| 321 | 266.83 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 334 | 266.90 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 367 | 267.15 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 368 | 267.16 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 412 | 267.41 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 415 | 267.46 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 417 | 267.46 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 421 | 267.48 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 423 | 267.48 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 442 | 267.55 | temperature | 15.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 444 | 267.56 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 446 | 267.56 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 450 | 267.57 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 465 | 267.61 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 475 | 267.62 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 484 | 267.65 | temperature | 15.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 520 | 267.73 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 533 | 267.74 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 536 | 267.74 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 539 | 267.75 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 541 | 267.75 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 547 | 267.76 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 19 | 7 |
| 551 | 267.77 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 563 | 267.78 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 564 | 267.78 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 573 | 267.80 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 574 | 267.80 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 591 | 267.83 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 622 | 267.87 | temperature | 15.0 | 90 | > th | dose independent | sin | 8 | NA |
| 623 | 267.87 | temperature | 15.0 | 270 | > th | dose independent | sin | 21 | NA |
| 647 | 267.89 | temperature | 15.0 | 90 | > th | dose independent | sin | 18 | NA |
| 664 | 267.90 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 666 | 267.90 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 715 | 267.90 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 717 | 267.90 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 719 | 267.90 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 722 | 267.90 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 860 | 267.90 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |