BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0349800 Os05g0349800|AK063677
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40170.1  | chr2:16779792-16780167 REVERSE LENGTH=93           128   6e-31
AT3G51810.1  | chr3:19214818-19215461 FORWARD LENGTH=153           91   1e-19

>AT2G40170.1 | chr2:16779792-16780167 REVERSE LENGTH=93
          Length = 92

 Score =  128 bits (321), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 82/95 (86%), Gaps = 3/95 (3%)

Query: 1  MASGQQQQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRSRGGQTRKEQMGEEGYR 60
          MAS   QQ + +LD  A++G+TVVPGGTGGKS EAQ++LAEGRSRGGQTRKEQ+G EGY+
Sbjct: 1  MAS---QQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEGYQ 57

Query: 61 EMGRKGGLSTGDESGGERAAREGIDIDESKYKTKS 95
          +MGRKGGLSTGD+ GGE A  EG++IDESK++TK+
Sbjct: 58 QMGRKGGLSTGDKPGGEHAEEEGVEIDESKFRTKT 92



>AT3G51810.1 | chr3:19214818-19215461 FORWARD LENGTH=153
          Length = 152

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%), Gaps = 2/67 (2%)

Query: 1  MASGQQQQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRSRGGQTRKEQMGEEGYR 60
          MAS  +Q  R ELD  A++G+TVVPGGTGG SLEAQE+LAEGRS+GGQTRKEQ+G EGY+
Sbjct: 1  MAS--KQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRSKGGQTRKEQLGHEGYQ 58

Query: 61 EMGRKGG 67
          E+G KGG
Sbjct: 59 EIGHKGG 65




 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 44  SRGGQTRKEQMGEEGYREMGRKGGLSTGDESGGERAAREGIDIDESKYKTK 94
            +GG+ RKEQ+G EGY+EMGRKGGLST ++SGGERA  EGI+IDESK+  K
Sbjct: 102 HKGGEARKEQLGHEGYKEMGRKGGLSTMEKSGGERAEEEGIEIDESKFTNK 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.303    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,170,687
Number of extensions: 90463
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 3
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 105 (45.1 bits)