Os05g0349500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os05g0349500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.18 | 0.319 | 11.3 | 1.22 | 0.108 | -0.958 | 0.882 | 0.52 | 0.19 | 15.1 | 22.5 | 1068 | -- | -- |
| 46.33 | 0.317 | 11.3 | 1.09 | 0.112 | -0.918 | 0.852 | -- | 0.15 | 15.3 | 22.6 | 1054 | -- | -- |
| 48.4 | 0.324 | 11.3 | 1.15 | 0.125 | -0.905 | -- | 0.177 | 0.166 | 12.7 | 22.8 | 1134 | -- | -- |
| 48.42 | 0.324 | 11.3 | 1.1 | 0.127 | -0.891 | -- | -- | 0.151 | 12.6 | 22.79 | 1131 | -- | -- |
| 49.21 | 0.327 | 11.3 | 1.14 | -- | -0.957 | -- | 0.128 | 0.167 | -- | 22.8 | 1094 | -- | -- |
| 70.33 | 0.393 | 11.3 | 0.798 | 0.306 | -- | 0.784 | -- | -0.02 | 13.3 | -- | -- | -- | -- |
| 72.69 | 0.399 | 11.3 | 0.824 | 0.307 | -- | -- | -- | -0.0168 | 12.5 | -- | -- | -- | -- |
| 49.23 | 0.327 | 11.3 | 1.11 | -- | -0.949 | -- | -- | 0.158 | -- | 22.8 | 1094 | -- | -- |
| 77.97 | 0.411 | 11.3 | -- | 0.176 | -0.612 | -- | -- | -0.0199 | 12.9 | 23 | 1121 | -- | -- |
| 78.6 | 0.414 | 11.3 | 0.813 | -- | -- | -- | -- | -0.022 | -- | -- | -- | -- | -- |
| 90.58 | 0.445 | 11.4 | -- | 0.295 | -- | -- | -- | -0.109 | 12.4 | -- | -- | -- | -- |
| 79.24 | 0.415 | 11.3 | -- | -- | -0.698 | -- | -- | -0.0277 | -- | 23.73 | 1076 | -- | -- |
| 96.05 | 0.457 | 11.4 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 9 | 47.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 18 | 47.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 21 | 47.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 24 | 47.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 51 | 47.79 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 93 | 48.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 105 | 48.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 145 | 48.29 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 150 | 48.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 153 | 48.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 155 | 48.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 162 | 48.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 191 | 48.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 213 | 48.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 233 | 48.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 237 | 48.58 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 271 | 48.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 278 | 48.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 359 | 48.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 625 | 49.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 667 | 49.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 677 | 49.32 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 805 | 49.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |