BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0349500 Os05g0349500|AK101703
(472 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15970.1 | chr3:5408982-5410379 REVERSE LENGTH=466 253 1e-67
AT1G52380.1 | chr1:19509979-19511301 FORWARD LENGTH=441 199 2e-51
AT2G30060.1 | chr2:12827035-12828551 FORWARD LENGTH=218 49 4e-06
>AT3G15970.1 | chr3:5408982-5410379 REVERSE LENGTH=466
Length = 465
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 190/501 (37%), Positives = 265/501 (52%), Gaps = 67/501 (13%)
Query: 1 MADEEHA-PTSRKRVAGTQINKDNPEPDDD---STEQEMGTFKRASEEVMATRRIVKVRR 56
M D ++A P SRKR A ++++DNP DDD ++ E GTF AS+EV+A+RRI++VRR
Sbjct: 1 MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60
Query: 57 -QQPSSAP--SNPFSAIRFTP------SDTSAQATIPVSEPQPSDVITANAKDSSSEKAD 107
+ ++AP SNPF+ IR P S +A+ T P+S + + A+ + ++++ D
Sbjct: 61 TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGKQETL--ADGRSDATKETD 118
Query: 108 EGSNGSGKDAL-PVTDKSAGSSEVAETEKDGSDLKGSDEKAKSSDSIEPPSQPVETTDEA 166
G + DA+ V + E++ KD D G E +++ +S+E + DE
Sbjct: 119 -GDSKEKSDAIDAVGKQETQGDEISAKTKDIID-GGEKEMSEAVNSVEGGGAVNKNEDEI 176
Query: 167 KDLGGGSVVAGE--AKEDNSKASDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 224
K V AGE K+DN+ ++ +
Sbjct: 177 KTTMVTEVAAGEETVKDDNNNSNTVEGSDCVVKDTGGNQTEKEGKE-------------- 222
Query: 225 XXXXXXXXSSEEQKDADNKGQSSSPTPLFSFKNLSSGQNAFTGLAXXXXXXXXXXXXXXX 284
+ +D + G S + L SF SS +NAFTGLA
Sbjct: 223 ---------GDGNEDTEKNGDSGA---LSSFHQHSSSKNAFTGLASTGFSASSFSFGL-- 268
Query: 285 XXXXXAPLFGLKTDGSSFPSFSIGASNNGSSSPALATSAEAPKKF------AMP---EGP 335
P G GS SFS G +NNG+SS A+ A + A P +
Sbjct: 269 -----VPQEGSTGSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVS 323
Query: 336 VETGEENEKAIFTADSALYEYLDGGWKERGKGELKLNIPVSGGERSRLVMRTKGNYRLVL 395
VETGEENEKA FTADS ++EYL+GGWKERGKGELK+NI + ++RLVMR+KGNYRL L
Sbjct: 324 VETGEENEKAAFTADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTL 383
Query: 396 NASLYEDMSLKDMDKKGVTFACMNSIGDSQSGLATFALKFRDTSIREEFKAAVEMHKAKK 455
NASLY +M L MDKKG+TFAC+NS+ D++ GL+T ALKF+D ++ EEF+A +E HK K
Sbjct: 384 NASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSK 443
Query: 456 -----ASGTLKTPENSPKASD 471
A+ LKTPENSP A D
Sbjct: 444 PSVAEAAAPLKTPENSPSAED 464
>AT1G52380.1 | chr1:19509979-19511301 FORWARD LENGTH=441
Length = 440
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 31/235 (13%)
Query: 254 SFKNLSSGQNAFTGLAXXXXXXXXXXXXXXXXXXXXAPLFGLKT-DGSSFPS--FSIGAS 310
SF+ SS +NAFTGLA FGL + DGS+ F G
Sbjct: 219 SFQQHSSNKNAFTGLASTEASGSSFS-------------FGLVSQDGSTGTGSLFGFGLP 265
Query: 311 NNGSSSPALATSAEAPKKF---AMP---EGPVETGEENEKAIFTADSALYEYLDGGWKER 364
++ SSS AT + KK P E ETGEENEK F+ADS ++EYLDGGWKER
Sbjct: 266 SSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMFEYLDGGWKER 325
Query: 365 GKGELKLNIPVSGGERSRLVMRTKGNYRLVLNASLYEDMSLKDMDKKGVTFACMNSIGDS 424
GKGELK+N+ + G ++RLVMR KGNYRL+LNASLY +M L +MDKKG+TFAC+NS+ +
Sbjct: 326 GKGELKVNVSSNDG-KARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEG 384
Query: 425 QSGLATFALKFRDTSIREEFKAAVEMHK--------AKKASGTLKTPENSPKASD 471
+ GL+TFALKF+D +I EEF+ A++ HK A+K++ LKTPENSP A+D
Sbjct: 385 KEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTATD 439
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 17/123 (13%)
Query: 1 MADEEHAPT-SRKRVAGTQINKDNP--EPDDDSTEQEMGTFKRASEEVMATRRIVKVRRQ 57
M D E+ S+KR A Q+++DNP + DDDS E E GTFK+AS+EV+A+RRIV+V+R+
Sbjct: 1 MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60
Query: 58 QPSSAP---SNPFSAIRFTPSDTSAQATIPVSEPQP---------SDVITANAKDSSSEK 105
+PS+AP SNPF+ I+ P T+A A+ PV P V+ N K S E+
Sbjct: 61 EPSAAPVAASNPFAGIQLVP--TTAPASTPVGTNAPLAESKLAPAEAVVEDNQKASDIEE 118
Query: 106 ADE 108
DE
Sbjct: 119 GDE 121
>AT2G30060.1 | chr2:12827035-12828551 FORWARD LENGTH=218
Length = 217
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 321 TSAEAPKKFAMPEGPVETGEENEKAIFTADSALYEYLDGG--WKERGKGELK-LNIPVSG 377
T A+ + E V TGEE+E I S LY + G WKERG G +K L VSG
Sbjct: 26 TGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSG 85
Query: 378 GERSRLVMRTKGNYRLVLNASLYEDMSLKDM---DKKGVTFACMNSIGDSQSGLATFALK 434
+ RLVMR ++ N + MS+++ DK V A S G+ + L F ++
Sbjct: 86 --KIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDEL--FCIR 141
Query: 435 F 435
F
Sbjct: 142 F 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.303 0.122 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,203,036
Number of extensions: 378981
Number of successful extensions: 1433
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 6
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 113 (48.1 bits)