Os05g0347000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TAFII55 protein conserved region domain containing protein.
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Os05g0347000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TAFII55 protein conserved region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.44 | 0.191 | 12.7 | 0.204 | 0.917 | 0.535 | -0.479 | 0.679 | 0.138 | 21 | 64 | 9114 | -- | -- |
| 16.71 | 0.19 | 12.7 | 0.218 | 0.92 | 0.517 | -0.501 | -- | 0.154 | 21.1 | 66.03 | 8349 | -- | -- |
| 17.23 | 0.193 | 12.7 | 0.218 | 0.917 | 0.539 | -- | 0.708 | 0.14 | 21 | 64.36 | 9116 | -- | -- |
| 17.51 | 0.195 | 12.7 | 0.242 | 0.917 | 0.512 | -- | -- | 0.15 | 21.2 | 66.1 | 8372 | -- | -- |
| 64 | 0.373 | 12.7 | 0.253 | -- | 0.535 | -- | 0.518 | 0.129 | -- | 63.01 | 8778 | -- | -- |
| 21.15 | 0.216 | 12.7 | 0.337 | 0.904 | -- | -0.485 | -- | 0.114 | 21 | -- | -- | -- | -- |
| 21.96 | 0.219 | 12.7 | 0.354 | 0.905 | -- | -- | -- | 0.114 | 21.1 | -- | -- | -- | -- |
| 63.94 | 0.372 | 12.7 | 0.307 | -- | 0.609 | -- | -- | 0.0256 | -- | 63 | 4454 | -- | -- |
| 18.98 | 0.203 | 12.7 | -- | 0.926 | 0.543 | -- | -- | 0.112 | 21.2 | 65 | 8408 | -- | -- |
| 69.11 | 0.388 | 12.7 | 0.356 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 25.27 | 0.235 | 12.7 | -- | 0.904 | -- | -- | -- | 0.075 | 21.1 | -- | -- | -- | -- |
| 65.65 | 0.377 | 12.7 | -- | -- | 0.632 | -- | -- | 0.114 | -- | 66 | 8773 | -- | -- |
| 72.45 | 0.397 | 12.7 | -- | -- | -- | -- | -- | 0.0697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 16.38 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 3 | 16.40 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 4 | 16.40 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 7 | 16.54 | humidity | 60 | 14400 | < th | dose independent | sin | 12 | NA |
| 12 | 16.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 20 | 16.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 21 | 16.59 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 49 | 16.63 | humidity | 60 | 14400 | > th | dose independent | sin | 12 | NA |
| 50 | 16.63 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 64 | 16.67 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 76 | 16.73 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 81 | 16.78 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 104 | 16.85 | humidity | 60 | 14400 | < th | dose dependent | sin | 12 | NA |
| 106 | 16.86 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 136 | 16.93 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 200 | 17.03 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 205 | 17.04 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 209 | 17.05 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 215 | 17.06 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 321 | 17.17 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 388 | 17.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 389 | 17.22 | humidity | 80 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 481 | 17.29 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 484 | 17.29 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 492 | 17.29 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 605 | 17.30 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 646 | 17.32 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 656 | 17.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 14 |
| 690 | 17.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 19 |
| 732 | 17.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 745 | 17.33 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 791 | 17.34 | humidity | 60 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 839 | 17.35 | humidity | 70 | 14400 | < th | dose dependent | no | NA | NA |
| 840 | 17.35 | humidity | 60 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 847 | 17.35 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 908 | 17.35 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 928 | 17.36 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 23 |