BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0347000 Os05g0347000|AK109444
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55300.2  | chr1:20628154-20629490 REVERSE LENGTH=240          196   9e-51

>AT1G55300.2 | chr1:20628154-20629490 REVERSE LENGTH=240
          Length = 239

 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 117/158 (74%), Gaps = 6/158 (3%)

Query: 1   MEEQFILRVPPSVAERIERLMNEXXXXXXXXNPEDASLDLSFSEDGRNGTFMIGNESFPA 60
           MEEQFILRVPPSV+ERI+RL++E          ++  LDL FSEDGRNGTFMIGN+ FPA
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDAS-----TSDEIPLDLFFSEDGRNGTFMIGNDEFPA 55

Query: 61  SLLDLPTVVESYKTYDDSVLIKTADIGQMIMVREEEDPAPEGVEYKHGLTPPMXXXXXXX 120
           SLLDLP VVES+KTYDD  L+KTADIGQMIMVRE  DPAP  VEY+HGLTPPM       
Sbjct: 56  SLLDLPAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRR 115

Query: 121 XXXEPDLNAELVHRVEKDLISIMHGVSI-NQNASAILR 157
              EPDLN ELV RVE+DL++I+ G ++ N + S   R
Sbjct: 116 FRREPDLNPELVQRVERDLLNILSGGTVENVSFSFYFR 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,844,682
Number of extensions: 146218
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)