Os05g0342900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0342900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.03 | 0.441 | 11.2 | -0.119 | 1.11 | 1.06 | -0.54 | -1.37 | 0.245 | 21.9 | 19.2 | 1625 | -- | -- |
| 90.32 | 0.443 | 11.1 | 0.0199 | 1.11 | 1.38 | -0.488 | -- | 0.275 | 21.9 | 19.01 | 1621 | -- | -- |
| 89.14 | 0.44 | 11.2 | -0.0925 | 1.11 | 1.06 | -- | -1.34 | 0.25 | 21.9 | 19.2 | 1638 | -- | -- |
| 91.38 | 0.445 | 11.2 | 0.0548 | 1.1 | 1.36 | -- | -- | 0.28 | 21.9 | 19.01 | 1627 | -- | -- |
| 148.75 | 0.568 | 11.1 | -0.0422 | -- | 1.16 | -- | -0.779 | 0.243 | -- | 19.7 | 784 | -- | -- |
| 114.65 | 0.502 | 11.1 | 0.516 | 1.09 | -- | -0.376 | -- | 0.488 | 21.9 | -- | -- | -- | -- |
| 115.19 | 0.503 | 11.1 | 0.531 | 1.1 | -- | -- | -- | 0.489 | 21.9 | -- | -- | -- | -- |
| 150.34 | 0.571 | 11.1 | 0.0712 | -- | 1.27 | -- | -- | 0.254 | -- | 19.62 | 784 | -- | -- |
| 91.45 | 0.445 | 11.2 | -- | 1.11 | 1.39 | -- | -- | 0.272 | 21.9 | 19.03 | 1627 | -- | -- |
| 187.38 | 0.64 | 11.1 | 0.544 | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
| 122.63 | 0.518 | 11.1 | -- | 1.1 | -- | -- | -- | 0.43 | 21.9 | -- | -- | -- | -- |
| 150.46 | 0.571 | 11.1 | -- | -- | 1.3 | -- | -- | 0.243 | -- | 19.63 | 784 | -- | -- |
| 195.17 | 0.652 | 11.1 | -- | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 84.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 4 | 84.96 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 6 | 85.55 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 8 | 85.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 10 | 85.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 12 | 85.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 14 | 85.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 15 | 85.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 17 | 85.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 45 | 86.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 50 | 86.08 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 79 | 86.34 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 98 | 86.44 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 127 | 86.60 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 136 | 86.64 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 141 | 86.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 146 | 86.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 163 | 86.77 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 175 | 86.83 | wind | 9 | 43200 | < th | dose dependent | sin | 8 | NA |
| 176 | 86.84 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 178 | 86.85 | wind | 1 | 43200 | > th | dose dependent | sin | 8 | NA |
| 194 | 86.89 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 195 | 86.89 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 224 | 86.97 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 232 | 87.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 240 | 87.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 252 | 87.03 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 262 | 87.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 279 | 87.10 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 290 | 87.12 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 325 | 87.21 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 421 | 87.48 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 427 | 87.50 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 435 | 87.53 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 439 | 87.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 454 | 87.58 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 469 | 87.63 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 470 | 87.63 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 475 | 87.65 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 497 | 87.72 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 498 | 87.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 508 | 87.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 522 | 87.78 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 531 | 87.82 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 563 | 87.89 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 571 | 87.91 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 576 | 87.92 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 581 | 87.93 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 591 | 87.96 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 599 | 88.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 603 | 88.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 627 | 88.06 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 629 | 88.08 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 633 | 88.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 635 | 88.09 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 652 | 88.11 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 664 | 88.14 | wind | 3 | 43200 | > th | dose independent | sin | 7 | NA |
| 665 | 88.14 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 671 | 88.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 676 | 88.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 692 | 88.17 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 700 | 88.19 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 703 | 88.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 707 | 88.20 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 711 | 88.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 756 | 88.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 761 | 88.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 789 | 88.34 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 848 | 88.43 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 852 | 88.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 865 | 88.46 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 877 | 88.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 878 | 88.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 886 | 88.48 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 888 | 88.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 909 | 88.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 928 | 88.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 965 | 88.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 11 |
| 970 | 88.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |