BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0342900 Os05g0342900|AK064169
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05360.1  | chr5:1588356-1589178 FORWARD LENGTH=164            117   1e-27
AT2G38450.1  | chr2:16102016-16102683 FORWARD LENGTH=139          110   1e-25

>AT5G05360.1 | chr5:1588356-1589178 FORWARD LENGTH=164
          Length = 163

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 65/93 (69%)

Query: 7   GAVEEERKPLSEVVGDCVQRWFQDALKEARRGDSAMQVLVAQMYHSGYGIPKNEHKGRAW 66
           G+    R PL++VV DCV+RWFQD LKEA+ GD  MQVLV QMY SGYGIPK+E+KGRAW
Sbjct: 71  GSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAW 130

Query: 67  AEKASRYRPSVWKVGTKRPGYNAXXXXXXEMND 99
             KASR R S W+V  K PGYNA      +  D
Sbjct: 131 INKASRTRSSAWQVSDKPPGYNASDSDSNDKKD 163



>AT2G38450.1 | chr2:16102016-16102683 FORWARD LENGTH=139
          Length = 138

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 58/75 (77%)

Query: 15  PLSEVVGDCVQRWFQDALKEARRGDSAMQVLVAQMYHSGYGIPKNEHKGRAWAEKASRYR 74
           PLS VV DC +RWF+D L+EA+ G+  MQVL+ QMY+SGYG+PK+  KGR W  KASR R
Sbjct: 56  PLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRVR 115

Query: 75  PSVWKVGTKRPGYNA 89
            SVWKV  KRPGYNA
Sbjct: 116 SSVWKVIDKRPGYNA 130



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,319,197
Number of extensions: 77218
Number of successful extensions: 143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)