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Os05g0335100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Saposin B domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0197) R2 : 0.686
β1 : -1.87 (0.0742) R2dD : 0.503 R2D : 0.399
β2 : 0.831 (0.0518) R2dC : 0.195 R2C : 0.0998
β3 : -1.16 (0.0941) R2dE : 0.141 R2E : -0.0325
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0452) R2dN8 : 0.00906 R2N8 : 0.0524
σ : 0.36
deviance : 59.78
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C
peak time of C : 4.53
E
wheather : temperature
threshold : 25.15
memory length : 140
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.73 0.36 10 -1.74 0.821 -1.26 0.393 -0.925 0.167 4.37 24.8 112 -- --
59.77 0.36 10 -1.87 0.821 -1.16 0.12 -- 0.133 4.46 25.16 141 -- --
59.07 0.358 10 -1.76 0.815 -1.22 -- -0.71 0.165 4.42 24.8 117 -- --
59.78 0.36 10 -1.87 0.831 -1.16 -- -- 0.129 4.53 25.15 140 -- --
85.28 0.43 10 -1.82 -- -1.14 -- -0.44 0.136 -- 25.7 1239 -- --
79.04 0.417 9.99 -1.59 0.661 -- 0.086 -- 0.36 5.1 -- -- -- --
79.06 0.416 9.99 -1.59 0.661 -- -- -- 0.359 5.11 -- -- -- --
85.4 0.43 10.1 -1.89 -- -1.08 -- -- 0.13 -- 26.01 1254 -- --
142.35 0.559 9.97 -- 0.684 -0.425 -- -- 0.462 4.79 25.15 140 -- --
101.98 0.472 10 -1.56 -- -- -- -- 0.376 -- -- -- -- --
145.31 0.564 9.95 -- 0.634 -- -- -- 0.536 5.2 -- -- -- --
161.66 0.592 9.95 -- -- 0.54 -- -- 0.611 -- 36.71 318 -- --
166.34 0.602 9.96 -- -- -- -- -- 0.549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.47 temperature 25 90 < th dose dependent rect. 23 23
3 58.32 temperature 25 270 < th dose dependent rect. 9 22
6 58.66 temperature 25 10 < th dose dependent rect. 1 23
7 58.75 temperature 25 90 < th dose dependent rect. 19 23
10 58.81 temperature 25 90 < th dose dependent no NA NA
12 58.87 temperature 25 90 < th dose dependent rect. 13 23
13 58.88 temperature 25 90 < th dose dependent rect. 15 23
15 58.93 temperature 25 90 < th dose dependent rect. 23 20
20 58.99 temperature 25 90 < th dose dependent rect. 11 23
29 59.11 temperature 25 90 < th dose dependent rect. 17 23
38 59.15 temperature 25 30 < th dose dependent rect. 3 23
77 59.64 temperature 25 30 < th dose dependent rect. 5 23
109 59.82 temperature 30 270 < th dose dependent sin 10 NA
149 60.18 temperature 15 90 > th dose dependent sin 8 NA
251 61.00 temperature 15 10 > th dose dependent sin 7 NA
314 61.40 temperature 25 720 < th dose dependent rect. 9 16
361 61.68 temperature 20 270 > th dose dependent rect. 19 14
378 61.76 temperature 25 720 < th dose dependent sin 17 NA
387 61.81 temperature 30 270 < th dose dependent rect. 21 10
539 62.51 temperature 25 720 < th dose dependent rect. 17 8
540 62.51 temperature 25 720 < th dose dependent rect. 16 10
578 62.64 temperature 25 720 < th dose dependent rect. 13 14
605 62.76 temperature 25 1440 < th dose dependent rect. 18 1
630 62.87 temperature 25 1440 < th dose dependent rect. 17 4
634 62.89 wind 9 14400 > th dose dependent rect. 4 9
640 62.91 temperature 25 720 < th dose dependent rect. 17 6
662 62.96 wind 9 14400 < th dose independent rect. 2 11
703 63.10 wind 9 14400 > th dose independent rect. 4 9
738 63.19 temperature 20 270 > th dose independent rect. 16 23
851 63.65 temperature 20 270 > th dose independent rect. 14 23
929 63.95 temperature 20 270 > th dose independent rect. 3 23