Os05g0333200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1).
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Os05g0333200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.38 | 0.227 | 11.8 | -1.2 | 0.643 | 0.708 | -0.372 | 0.13 | -0.216 | 20.4 | 25.4 | 97 | -- | -- |
| 23.41 | 0.225 | 11.8 | -1.18 | 0.643 | 0.707 | -0.354 | -- | -0.21 | 20.4 | 25.4 | 100 | -- | -- |
| 23.76 | 0.227 | 11.8 | -1.17 | 0.647 | 0.681 | -- | 0.0275 | -0.218 | 20.6 | 25.2 | 120 | -- | -- |
| 23.76 | 0.227 | 11.8 | -1.17 | 0.648 | 0.683 | -- | -- | -0.219 | 20.6 | 25.21 | 121 | -- | -- |
| 44.16 | 0.311 | 11.8 | -1.18 | -- | 0.953 | -- | 0.23 | -0.242 | -- | 23.1 | 2 | -- | -- |
| 30.32 | 0.258 | 11.8 | -1.34 | 0.664 | -- | -0.193 | -- | -0.355 | 21.2 | -- | -- | -- | -- |
| 30.44 | 0.258 | 11.8 | -1.34 | 0.664 | -- | -- | -- | -0.355 | 21.3 | -- | -- | -- | -- |
| 44.24 | 0.311 | 11.8 | -1.15 | -- | 0.921 | -- | -- | -0.236 | -- | 23.15 | 2 | -- | -- |
| 55.66 | 0.347 | 11.8 | -- | 0.759 | 1.16 | -- | -- | 0.012 | 19.8 | 26.49 | 220 | -- | -- |
| 56.15 | 0.35 | 11.8 | -1.33 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 77.57 | 0.412 | 11.8 | -- | 0.664 | -- | -- | -- | -0.206 | 21.1 | -- | -- | -- | -- |
| 64.33 | 0.374 | 11.7 | -- | -- | 1.18 | -- | -- | -0.00444 | -- | 21.09 | 14467 | -- | -- |
| 103.09 | 0.474 | 11.8 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 4 | 22.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 5 | 22.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 6 | 22.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 40 | 23.15 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 94 | 23.44 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 125 | 23.57 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 132 | 23.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 136 | 23.60 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 148 | 23.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 174 | 23.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 203 | 23.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 11 |
| 209 | 23.72 | temperature | 25 | 270 | < th | dose dependent | sin | 20 | NA |
| 251 | 23.79 | temperature | 20 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 263 | 23.80 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 285 | 23.82 | temperature | 25 | 90 | < th | dose dependent | sin | 18 | NA |
| 286 | 23.82 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 339 | 23.85 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 359 | 23.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 406 | 23.90 | temperature | 20 | 10 | < th | dose dependent | sin | 17 | NA |
| 433 | 23.92 | temperature | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 461 | 23.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 471 | 23.95 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 473 | 23.95 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 661 | 24.07 | temperature | 20 | 1440 | < th | dose dependent | sin | 3 | NA |
| 688 | 24.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 689 | 24.09 | temperature | 20 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 697 | 24.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 737 | 24.12 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 756 | 24.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 864 | 24.18 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 908 | 24.20 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 947 | 24.22 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 968 | 24.23 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 8 |
| 986 | 24.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 987 | 24.24 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 17 |