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Os05g0313500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase superfamily, zinc-containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0177) R2 : 0.543
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.01 (0.0453) R2dC : 0.5 R2C : 0.477
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.266 (0.0372) R2dN8 : 0.0661 R2N8 : 0.043
σ : 0.333
deviance : 50.69
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.5 0.303 12.9 0.0921 1.44 0.834 0.197 0.982 0.3 16.9 3.272 252 -- --
44.68 0.311 12.9 0.114 1.43 0.844 -0.684 -- 0.299 16.8 3.08 251 -- --
41.56 0.3 12.9 0.0922 1.43 0.828 -- 0.899 0.301 16.9 3.32 251 -- --
45.79 0.315 12.9 0.1 1.43 0.847 -- -- 0.301 16.9 3.139 251 -- --
83.59 0.428 12.9 0.0286 -- 0.413 -- 0.765 0.268 -- 3.32 251 -- --
49.76 0.331 12.9 0.0602 1.01 -- 0.576 -- 0.269 19.9 -- -- -- --
50.63 0.333 12.9 0.0464 1.01 -- -- -- 0.271 19.8 -- -- -- --
64.09 0.373 12.8 -0.339 -- -1.41 -- -- 0.362 -- 0.159 929 -- --
46.05 0.316 12.9 -- 1.45 0.862 -- -- 0.294 16.9 3.27 251 -- --
105.79 0.481 12.9 0.0339 -- -- -- -- 0.256 -- -- -- -- --
50.69 0.333 12.9 -- 1.01 -- -- -- 0.266 19.8 -- -- -- --
60.44 0.362 12.9 -- -- -1.32 -- -- 0.239 -- 0.09001 914 -- --
105.82 0.48 12.9 -- -- -- -- -- 0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.57 temperature 10.0 90 > th dose dependent rect. 7 16
2 38.52 radiation 1.0 270 < th dose independent rect. 20 22
4 38.71 radiation 10.0 270 < th dose dependent sin 11 NA
7 38.87 temperature 10.0 270 > th dose dependent rect. 5 17
10 39.05 temperature 15.0 10 > th dose dependent rect. 7 17
12 39.11 radiation 30.0 10 < th dose dependent sin 9 NA
21 39.35 temperature 30.0 270 < th dose independent rect. 10 6
38 39.66 radiation 1.0 270 < th dose dependent rect. 21 21
50 39.79 temperature 25.0 720 < th dose independent rect. 5 8
59 39.92 radiation 1.0 270 < th dose independent sin 11 NA
72 40.07 temperature 30.0 270 < th dose independent rect. 23 16
91 40.22 temperature 15.0 10 > th dose dependent rect. 5 19
110 40.36 radiation 10.0 90 < th dose dependent rect. 23 18
135 40.54 temperature 30.0 270 < th dose dependent rect. 10 7
136 40.54 radiation 20.0 90 < th dose dependent rect. 23 11
137 40.55 atmosphere 1000.0 90 > th dose independent rect. 23 8
144 40.59 radiation 1.0 270 > th dose independent rect. 15 22
157 40.68 humidity 90.0 90 < th dose independent rect. 7 16
166 40.76 atmosphere 995.0 90 > th dose dependent rect. 23 8
176 40.80 temperature 10.0 270 > th dose dependent rect. 3 8
189 40.84 precipitation 0.1 720 < th dose independent rect. 3 16
194 40.84 precipitation 0.1 720 < th dose dependent rect. 3 16
196 40.85 radiation 10.0 270 < th dose dependent rect. 21 11
201 40.87 precipitation 0.1 270 < th dose independent rect. 17 16
203 40.87 precipitation 0.1 270 < th dose dependent rect. 17 16
206 40.89 radiation 20.0 30 < th dose independent sin 10 NA
207 40.89 radiation 1.0 270 < th dose independent rect. 21 13
213 40.90 radiation 1.0 43200 < th dose dependent rect. 19 6
229 40.96 temperature 25.0 720 < th dose independent sin 3 NA
231 40.96 wind 7.0 270 < th dose independent rect. 16 17
232 40.97 atmosphere 995.0 30 > th dose independent rect. 11 7
234 40.98 atmosphere 1000.0 270 > th dose independent rect. 21 9
245 41.01 precipitation 0.1 30 < th dose independent rect. 18 17
249 41.01 precipitation 0.1 30 < th dose dependent rect. 18 17
251 41.02 radiation 10.0 10 < th dose dependent rect. 19 23
273 41.09 wind 7.0 270 < th dose independent rect. 15 19
275 41.11 radiation 10.0 90 < th dose independent rect. 23 11
280 41.13 atmosphere 995.0 270 > th dose independent rect. 9 8
284 41.13 radiation 1.0 720 < th dose dependent rect. 5 22
304 41.20 precipitation 0.1 270 < th dose independent rect. 3 8
307 41.20 precipitation 0.1 270 < th dose dependent rect. 3 8
320 41.23 temperature 10.0 30 > th dose independent rect. 11 7
322 41.23 atmosphere 1015.0 30 < th dose independent rect. 11 7
324 41.23 temperature 10.0 30 > th dose independent rect. 18 17
325 41.23 humidity 50.0 30 > th dose independent rect. 18 17
330 41.24 atmosphere 995.0 30 > th dose independent rect. 18 17
333 41.25 radiation 30.0 720 < th dose independent rect. 15 16
342 41.26 precipitation 0.1 30 < th dose independent rect. 11 7
343 41.26 wind 9.0 30 < th dose independent rect. 18 17
346 41.26 precipitation 0.1 30 < th dose dependent rect. 11 7
352 41.27 humidity 50.0 270 > th dose dependent rect. 10 6
360 41.29 wind 1.0 30 > th dose independent rect. 11 7
361 41.29 atmosphere 1000.0 720 > th dose independent rect. 19 16
362 41.30 radiation 1.0 270 > th dose independent sin 10 NA
363 41.30 temperature 30.0 720 < th dose independent rect. 19 19
367 41.31 wind 9.0 30 < th dose independent rect. 11 7
376 41.33 precipitation 0.1 720 < th dose independent rect. 7 8
377 41.33 precipitation 0.1 720 < th dose dependent rect. 7 8
394 41.37 humidity 70.0 720 > th dose independent rect. 16 5
403 41.38 radiation 1.0 720 > th dose independent rect. 17 22
410 41.39 wind 9.0 270 < th dose dependent rect. 3 8
411 41.39 temperature 30.0 720 < th dose dependent rect. 6 8
416 41.41 atmosphere 995.0 270 > th dose independent rect. 11 16
419 41.42 radiation 1.0 720 < th dose independent rect. 5 22
434 41.45 temperature 10.0 270 > th dose independent rect. 9 7
435 41.45 atmosphere 1015.0 270 < th dose independent rect. 9 7
437 41.45 temperature 10.0 270 > th dose independent rect. 16 17
443 41.46 wind 9.0 270 < th dose independent rect. 9 7
447 41.46 radiation 20.0 10 < th dose dependent rect. 23 17
455 41.48 radiation 10.0 90 < th dose independent rect. 23 18
467 41.50 humidity 70.0 720 > th dose independent rect. 17 10
472 41.51 temperature 20.0 90 > th dose independent rect. 7 16
479 41.52 precipitation 0.1 270 < th dose independent rect. 9 7
482 41.52 precipitation 0.1 270 < th dose dependent rect. 9 7
485 41.53 wind 1.0 270 > th dose independent rect. 9 7
486 41.53 humidity 50.0 270 > th dose independent rect. 9 7
496 41.55 wind 1.0 10 > th dose independent rect. 18 17
509 41.57 atmosphere 1015.0 30 < th dose independent rect. 18 17
519 41.59 humidity 50.0 30 > th dose independent rect. 11 7
520 41.59 wind 1.0 90 > th dose independent rect. 23 8
529 41.60 temperature 10.0 1440 > th dose independent rect. 12 7
537 41.60 temperature 10.0 1440 > th dose independent rect. 19 17
543 41.60 radiation 40.0 270 < th dose dependent rect. 12 16
544 41.61 humidity 70.0 720 > th dose independent sin 14 NA
604 41.67 radiation 40.0 720 < th dose dependent rect. 15 16
605 41.67 temperature 10.0 30 > th dose dependent rect. 18 17
610 41.68 humidity 80.0 10 > th dose independent rect. 23 23
631 41.70 radiation 1.0 43200 < th dose dependent rect. 19 8
643 41.71 wind 7.0 270 < th dose independent rect. 3 8
655 41.72 temperature 25.0 30 > th dose dependent sin 9 NA
685 41.75 precipitation 0.1 90 < th dose independent rect. 7 16
688 41.75 precipitation 0.1 90 < th dose dependent rect. 7 16
690 41.75 atmosphere 1015.0 30 < th dose dependent rect. 18 17
693 41.76 temperature 10.0 270 > th dose independent rect. 3 8
694 41.76 atmosphere 995.0 270 > th dose independent rect. 3 8
695 41.76 atmosphere 1015.0 270 < th dose independent rect. 3 8
696 41.76 temperature 10.0 270 > th dose independent rect. 11 16
712 41.78 humidity 80.0 10 < th dose independent rect. 7 13
726 41.79 temperature 30.0 720 < th dose independent rect. 2 19
736 41.80 temperature 30.0 270 < th dose dependent rect. 12 17
751 41.81 temperature 15.0 10 > th dose dependent rect. 7 13
770 41.84 precipitation 0.1 270 < th dose independent rect. 5 16
776 41.84 precipitation 0.1 270 < th dose dependent rect. 5 16
777 41.84 temperature 30.0 10 < th dose dependent rect. 13 19
792 41.87 temperature 30.0 720 < th dose independent rect. 4 17
798 41.88 humidity 50.0 270 > th dose independent rect. 3 8
801 41.88 wind 9.0 270 < th dose independent rect. 11 16
813 41.89 atmosphere 1000.0 270 > th dose independent rect. 23 15
819 41.90 radiation 1.0 720 > th dose independent rect. 7 8
823 41.90 radiation 10.0 90 < th dose independent rect. 23 16
838 41.91 radiation 20.0 270 < th dose independent rect. 12 16
845 41.91 radiation 1.0 720 < th dose dependent rect. 5 16
861 41.93 wind 1.0 270 > th dose independent rect. 21 9
866 41.93 temperature 30.0 720 < th dose independent rect. 10 17
875 41.94 radiation 1.0 720 < th dose independent rect. 5 16
880 41.94 radiation 10.0 10 < th dose dependent rect. 23 19
908 41.97 radiation 1.0 270 < th dose independent no NA NA
913 41.97 radiation 1.0 270 < th dose independent rect. 10 23
917 41.97 radiation 20.0 10 < th dose dependent rect. 23 11
919 41.98 humidity 70.0 10 > th dose independent sin 9 NA
923 41.98 radiation 1.0 270 < th dose independent rect. 7 23
931 41.99 radiation 1.0 270 > th dose independent no NA NA
937 41.99 radiation 1.0 270 > th dose independent rect. 4 15
948 41.99 humidity 80.0 10 > th dose independent rect. 23 19