BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0313500 Os05g0313500|J100065F18
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56460.1 | chr3:20933029-20934425 REVERSE LENGTH=349 206 5e-54
AT1G23740.1 | chr1:8398245-8399656 REVERSE LENGTH=387 59 2e-09
AT4G21580.1 | chr4:11475822-11477514 FORWARD LENGTH=326 59 2e-09
AT3G15090.1 | chr3:5076847-5078870 FORWARD LENGTH=367 51 5e-07
>AT3G56460.1 | chr3:20933029-20934425 REVERSE LENGTH=349
Length = 348
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/153 (66%), Positives = 120/153 (78%), Gaps = 2/153 (1%)
Query: 1 MDALVVRRLGDPT-LAPGGEASPFAPVTGDHPAPALASPTSVRVRVAATSLNFATYLQVQ 59
M+ALV R+LGDPT PG SP V+ HP P+L S TSVRVRV ATSLN+A YLQ+
Sbjct: 1 MEALVCRKLGDPTATNPGSPESP-VEVSKTHPIPSLNSDTSVRVRVIATSLNYANYLQIL 59
Query: 60 GKYQERPALPFVPGSDYAGFVDAVGPAVRRFRPGDRVCGLAAVGSFADLIVADEKQLFSV 119
GKYQE+P LPF+PGSDY+G VDA+GPAV +FR GDRVC A +GSFA IVAD+ +LF V
Sbjct: 60 GKYQEKPPLPFIPGSDYSGIVDAIGPAVTKFRVGDRVCSFADLGSFAQFIVADQSRLFLV 119
Query: 120 PDGCDLVAAGALPVAFGTSHLALVHRAELKAGQ 152
P+ CD+VAA ALPVAFGTSH+ALVHRA L +GQ
Sbjct: 120 PERCDMVAAAALPVAFGTSHVALVHRARLTSGQ 152
>AT1G23740.1 | chr1:8398245-8399656 REVERSE LENGTH=387
Length = 386
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 40 SVRVRVAATSLNFATYLQVQGKYQERPA-LPFVPGSDYAGFVDAVGPAVRRFRPGDRVC- 97
V ++V A +LN + QGK++ + LP VPG D AG V VG AV+ + GD V
Sbjct: 107 QVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYA 166
Query: 98 --------GLAAVGSFADLIVADEKQLFSVPDGCDLVAAGALPVAFGTSHLALVHRAELK 149
G GS A+ +EK L P D A LP+A T+ LV R E
Sbjct: 167 NVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLV-RTEFS 225
Query: 150 AGQ 152
AG+
Sbjct: 226 AGK 228
>AT4G21580.1 | chr4:11475822-11477514 FORWARD LENGTH=326
Length = 325
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 40 SVRVRVAATSLNFATYLQVQGKYQERPALPFVPGSDYAGFVDAVGPAVRRFRPGDRVCGL 99
V +RV AT+LN A LQ G Y P G + +G +++VG V R++ GD+VC L
Sbjct: 29 EVLIRVLATALNRADTLQRLGLYNPPPGSSPYLGLECSGTIESVGKGVSRWKVGDQVCAL 88
Query: 100 AAVGSFADLIVADEKQLFSVPDGCDLVAAGALP 132
+ G +A+ + Q+F +P G L A A P
Sbjct: 89 LSGGGYAEKVSVPAGQIFPIPAGISLKDAAAFP 121
>AT3G15090.1 | chr3:5076847-5078870 FORWARD LENGTH=367
Length = 366
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 31 PAPALASPTSVRVRVAATSLN------FATYLQVQGKYQERPALPFVPGSDYAGFVDAVG 84
P P L +P V V+ A S+N A Y G+ +P LP + G D +G V A+G
Sbjct: 53 PVPNL-NPNEVLVKAKAVSVNPLDCRIRAGY----GRSVFQPHLPIIVGRDVSGEVAAIG 107
Query: 85 PAVRRFRPGDRVCG----LAAVGSFADLIVADEKQLFSVPDGCDLVAAGALPVAFGTSHL 140
+V+ + G V G A G++ D + E +L P V A A+P A T+
Sbjct: 108 TSVKSLKVGQEVFGALHPTALRGTYTDYGILSEDELTEKPSSISHVEASAIPFAALTAWR 167
Query: 141 ALVHRAELKAGQ 152
AL A + GQ
Sbjct: 168 ALKSNARITEGQ 179
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,396,248
Number of extensions: 171196
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 4
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)