Os05g0311600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase.
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Os05g0311600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.66 | 0.457 | 6 | 1.04 | 0.554 | 0.107 | 0.696 | 2.31 | 0.0298 | 14.2 | 1004 | 3396 | -- | -- |
| 97.81 | 0.461 | 6.01 | 0.941 | 0.578 | 0.423 | 0.639 | -- | 0.0637 | 14.1 | 999.2 | 5078 | -- | -- |
| 96.45 | 0.457 | 6 | 1.05 | 0.556 | 0.111 | -- | 2.24 | 0.035 | 14.3 | 1004 | 3409 | -- | -- |
| 99.1 | 0.464 | 6.01 | 0.946 | 0.552 | 0.479 | -- | -- | 0.0741 | 14.3 | 999.2 | 5076 | -- | -- |
| 114.82 | 0.499 | 6.01 | 1.03 | -- | 0.103 | -- | 2.25 | 0.0211 | -- | 1004 | 3460 | -- | -- |
| 103.77 | 0.478 | 6.03 | 1.01 | 0.554 | -- | 0.605 | -- | 0.0197 | 14.3 | -- | -- | -- | -- |
| 105.12 | 0.48 | 6.02 | 1.03 | 0.556 | -- | -- | -- | 0.0235 | 14.4 | -- | -- | -- | -- |
| 115.75 | 0.501 | 6.02 | 0.897 | -- | 0.638 | -- | -- | 0.0214 | -- | 998.2 | 9040 | -- | -- |
| 121.79 | 0.514 | 6.03 | -- | 0.54 | 0.63 | -- | -- | -0.0114 | 14.3 | 999.6 | 5079 | -- | -- |
| 123.42 | 0.519 | 6.03 | 1 | -- | -- | -- | -- | 0.00984 | -- | -- | -- | -- | -- |
| 132.84 | 0.539 | 6.05 | -- | 0.536 | -- | -- | -- | -0.0908 | 14.3 | -- | -- | -- | -- |
| 136.74 | 0.545 | 6.04 | -- | -- | 0.874 | -- | -- | -0.0236 | -- | 998.3 | 9325 | -- | -- |
| 149.91 | 0.571 | 6.05 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.42 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 2 | 90.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 5 | 90.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 8 | 91.30 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 24 | 92.06 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 34 | 92.32 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 36 | 92.38 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 39 | 92.44 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 40 | 92.46 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 50 | 92.63 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 53 | 92.66 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 56 | 92.71 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 58 | 92.72 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 62 | 92.78 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 65 | 92.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 70 | 92.87 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 73 | 92.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 89 | 93.05 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 100 | 93.15 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 105 | 93.17 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 120 | 93.25 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 123 | 93.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 126 | 93.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 134 | 93.27 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 164 | 93.36 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 172 | 93.38 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 184 | 93.43 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 191 | 93.46 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 195 | 93.46 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 199 | 93.49 | temperature | 15.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 226 | 93.57 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 229 | 93.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 251 | 93.62 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 263 | 93.64 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 282 | 93.70 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 303 | 93.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 304 | 93.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 313 | 93.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 326 | 93.76 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 336 | 93.77 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 363 | 93.81 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 375 | 93.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 376 | 93.83 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 396 | 93.86 | atmosphere | 1005.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 426 | 93.89 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 470 | 93.94 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 473 | 93.94 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 489 | 93.96 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 500 | 93.97 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 503 | 93.97 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 524 | 94.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 559 | 94.05 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 560 | 94.05 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 569 | 94.06 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 593 | 94.08 | atmosphere | 1005.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 604 | 94.09 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 627 | 94.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 640 | 94.13 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 664 | 94.15 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 666 | 94.15 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 667 | 94.15 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 709 | 94.20 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 727 | 94.23 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 729 | 94.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 731 | 94.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 5 |
| 736 | 94.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 742 | 94.24 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 743 | 94.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 757 | 94.26 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 772 | 94.27 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 776 | 94.28 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 780 | 94.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 8 |
| 786 | 94.29 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 837 | 94.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 852 | 94.37 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 886 | 94.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 888 | 94.41 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 892 | 94.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 900 | 94.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 929 | 94.44 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 937 | 94.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 13 |
| 976 | 94.48 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 978 | 94.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 11 |
| 982 | 94.48 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 11 |