BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0311600 Os05g0311600|AK100803
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G29763.1 | chr3:11593924-11595441 REVERSE LENGTH=506 109 3e-25
AT1G19260.1 | chr1:6657260-6659569 REVERSE LENGTH=770 106 3e-24
AT2G06541.1 | chr2:2598222-2600326 REVERSE LENGTH=593 104 1e-23
AT4G09660.1 | chr4:6104446-6106607 FORWARD LENGTH=665 100 2e-22
AT3G29450.1 | chr3:11322669-11324582 FORWARD LENGTH=523 98 1e-21
AT1G41920.1 | chr1:15680978-15684487 REVERSE LENGTH=497 65 6e-12
AT3G31402.1 | chr3:12770931-12773539 REVERSE LENGTH=394 61 2e-10
AT3G29765.1 | chr3:11595467-11597077 REVERSE LENGTH=537 56 3e-09
AT1G35150.1 | chr1:12864158-12866238 REVERSE LENGTH=460 55 7e-09
AT2G06500.1 | chr2:2580718-2583223 REVERSE LENGTH=583 52 8e-08
>AT3G29763.1 | chr3:11593924-11595441 REVERSE LENGTH=506
Length = 505
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 4 RWLTFQGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQK 63
R L QG PFRGH+ES S N+ NFLE++K +A ++ V++VVL+N+P+N + TS +QK
Sbjct: 50 RHLLHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQK 109
Query: 64 EILSIIAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK-GLIR 115
+I+ +++V +S+ EE+ N + ++VDE+ D S KEQMA+V RFV+K G+++
Sbjct: 110 DIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVK 162
>AT1G19260.1 | chr1:6657260-6659569 REVERSE LENGTH=770
Length = 769
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 4 RWLTFQGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQK 63
R L QG PFRGH+ES S N+ NF+E++K A ++ V++VVL+N+P+N + TS +QK
Sbjct: 182 RHLLHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQK 241
Query: 64 EILSIIAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK-GLIR 115
+I+ +++V +S+ EE+ N + ++VDE+ D S KEQMA+V RFV+K G+++
Sbjct: 242 DIVHCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVK 294
>AT2G06541.1 | chr2:2598222-2600326 REVERSE LENGTH=593
Length = 592
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 75/108 (69%)
Query: 4 RWLTFQGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQK 63
R+L QG FRGH+ES++S NR NFLE+VK A ++ V +VVLEN+P+N + +Q+
Sbjct: 115 RYLVRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQR 174
Query: 64 EILSIIAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK 111
+I+ ++V +S+ +E+ + +C+MVDE+ D KEQM +V RFV+K
Sbjct: 175 DIVHCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDK 222
>AT4G09660.1 | chr4:6104446-6106607 FORWARD LENGTH=665
Length = 664
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 9 QGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQKEILSI 68
QG FRGH+ES S N+ NFLE++K A ++ V++VVL+N+P+N + TS +QK+I+
Sbjct: 151 QGLSFRGHDESEESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVHC 210
Query: 69 IAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK-GLIR 115
+++V +S+ EE+ N + ++VDE+ D S KEQM +V RFV+K G+++
Sbjct: 211 FSEEVTRSIIEEMDNDVFGLLVDESADASNKEQMTVVFRFVDKYGVVK 258
>AT3G29450.1 | chr3:11322669-11324582 FORWARD LENGTH=523
Length = 522
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 72/102 (70%)
Query: 9 QGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQKEILSI 68
QG PFRGH+ES++S NR+NFLE+VK A ++ V ++VLEN+P+N + +QK+I+
Sbjct: 93 QGLPFRGHDESVDSANRENFLELVKYTAGQNEAVSKIVLENAPKNNQMACPKIQKDIVHC 152
Query: 69 IAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVN 110
A++V +S+ +E+ + + +MVDE+ D S KEQMA+ F +
Sbjct: 153 FAEEVIRSIIQEVDHDVFWLMVDESADISDKEQMAVKTFFAS 194
>AT1G41920.1 | chr1:15680978-15684487 REVERSE LENGTH=497
Length = 496
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 4 RWLTFQGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQK 63
R+L Q PFRGH+ES S NR NFLE+VK ++ + +VVLEN+P+N + ++ +
Sbjct: 5 RYLVRQRLPFRGHDESDESANRGNFLELVKYTVGQNEVISKVVLENAPKNNQMVFDEMSE 64
Query: 64 EILSIIAQKVQKSVREEIGNSKYCIMVDEA--RDKSKKEQMAIVLRFVNK 111
++ V S Y ++ + + S KEQMA+V RFV+K
Sbjct: 65 PLIPETRDPVPSSFLLLDLILDYPVVWQQTVQSNVSDKEQMAVVFRFVDK 114
>AT3G31402.1 | chr3:12770931-12773539 REVERSE LENGTH=394
Length = 393
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 31/111 (27%)
Query: 6 LTFQGCPFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVVLENSPRNEKYTSSDVQKEI 65
LT QG FRGH +S NS N+ NF+E++K Y+ D EVV
Sbjct: 49 LTKQGLAFRGHYKSENSANKGNFVELLK----YTADQNEVV------------------- 85
Query: 66 LSIIAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK-GLIR 115
KV KSV EEI ++ + ++VDE+ D S KEQM +V RF +K G+++
Sbjct: 86 ------KV-KSVIEEIDHNVFGLLVDESADVSDKEQMTLVFRFFDKSGIVK 129
>AT3G29765.1 | chr3:11595467-11597077 REVERSE LENGTH=537
Length = 536
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 57 TSSDVQKEILSIIAQKVQKSVREEIGNSKYCIMVDEARDKSKKEQMAIVLRFVNK-GLIR 115
TS +QK+I+ +++V +S+ EE+ N + ++VDE+ D S KEQMA+V RFV+K G+++
Sbjct: 2 TSPPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVK 61
>AT1G35150.1 | chr1:12864158-12866238 REVERSE LENGTH=460
Length = 459
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 12 PFRGHNESLNSLNRDNFLEMVKLLASYSKDVREVV--LENSPRNEKYTSSDVQKEILSII 69
FRG NE + NFL ++++A + +RE + + + Y S +Q E++ I+
Sbjct: 176 AFRGKNEKVGQDRNGNFLSFIEMIAEFDVVMREHIRRIGAAEIYSHYLSHKIQNELIGIL 235
Query: 70 AQKVQKSVREEIGNSKYC-IMVDEARDKSKKEQMAIVLRFVN 110
+++ + + I SKYC I++D D S KEQM +++R VN
Sbjct: 236 TGEIRLMIMKTIHASKYCSIILDCTPDISHKEQMTMIIRCVN 277
>AT2G06500.1 | chr2:2580718-2583223 REVERSE LENGTH=583
Length = 582
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 13 FRGHNESLNSLNRDNFLEMVKLLASYSKDVREVV--LENSPRNEKYTSSDVQKEILSIIA 70
FRG N+ + NFL ++++A + +RE + + Y S +Q E++S++A
Sbjct: 160 FRGENKKIGEDRNGNFLSFIEMIAEFDVVMREHIRKIGAGEIYSHYLSPKIQNELISMLA 219
Query: 71 QKVQKSVREEIGNSKY-CIMVDEARDKSKKEQMAIVLRFVN 110
Q+++ + + I SKY I++D D S KEQM I++R V+
Sbjct: 220 QEIRLMIMKTIRASKYFSIILDCTPDISHKEQMTILIRCVD 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,362,350
Number of extensions: 81382
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 10
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)