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Os05g0306000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : emp24/gp25L/p24 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0174) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.19 (0.0637) R2dE : 0.457 R2E : 0.397
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.171 (0.0374) R2dN8 : 0.035 R2N8 : -0.025
σ : 0.324
deviance : 48.49
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C
peak time of C : --
E
wheather : temperature
threshold : 21.36
memory length : 89
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.82 0.3 11.5 0.125 0.0525 -1.24 -1.54 1.87 0.235 14.4 21.91 91 -- --
42.84 0.305 11.5 -0.197 0.0142 -1.11 -1.04 -- 0.13 14.2 21.6 106 -- --
47.15 0.32 11.5 -0.25 0.0204 -1.15 -- -0.02 0.132 12.6 21.7 93 -- --
47.02 0.319 11.5 -0.22 0.0592 -1.18 -- -- 0.143 15.7 21.7 89 -- --
47.15 0.32 11.5 -0.221 -- -1.14 -- 0.062 0.137 -- 21.7 89 -- --
63.57 0.374 11.6 -0.443 0.398 -- 1.44 -- -0.0449 3.02 -- -- -- --
70.41 0.393 11.6 -0.474 0.408 -- -- -- -0.0537 3.3 -- -- -- --
47.15 0.32 11.5 -0.232 -- -1.13 -- -- 0.134 -- 21.7 89 -- --
48.19 0.323 11.5 -- 0.0888 -1.26 -- -- 0.18 15.4 21.47 89 -- --
79.8 0.417 11.6 -0.457 -- -- -- -- -0.043 -- -- -- -- --
76.34 0.409 11.6 -- 0.398 -- -- -- -0.000872 3.3 -- -- -- --
48.49 0.324 11.5 -- -- -1.19 -- -- 0.171 -- 21.36 89 -- --
85.31 0.431 11.6 -- -- -- -- -- 0.00774 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.84 temperature 20 720 > th dose dependent rect. 4 7
2 40.00 temperature 20 720 > th dose dependent rect. 23 14
3 40.09 temperature 20 720 > th dose dependent sin 6 NA
10 40.54 temperature 20 270 > th dose dependent rect. 16 23
19 40.96 temperature 20 90 > th dose dependent rect. 6 23
32 41.69 temperature 20 90 > th dose dependent no NA NA
35 41.79 temperature 15 43200 > th dose independent rect. 24 1
42 41.94 temperature 20 10 > th dose dependent rect. 7 22
49 42.02 temperature 15 43200 < th dose independent rect. 1 2
60 42.10 temperature 20 90 > th dose dependent rect. 1 23
80 42.20 temperature 25 10 > th dose dependent rect. 7 17
81 42.21 temperature 20 90 > th dose dependent rect. 3 23
93 42.29 humidity 90 43200 > th dose independent rect. 22 19
96 42.29 humidity 90 43200 > th dose independent rect. 7 21
105 42.30 temperature 20 90 > th dose dependent rect. 23 23
113 42.33 humidity 90 43200 > th dose independent rect. 9 19
144 42.38 humidity 90 43200 > th dose independent rect. 14 22
145 42.38 humidity 90 43200 > th dose independent rect. 17 22
146 42.38 humidity 90 43200 > th dose independent rect. 9 23
166 42.41 humidity 90 43200 > th dose independent no NA NA
169 42.41 humidity 90 43200 > th dose independent rect. 17 19
205 42.45 temperature 25 10 > th dose dependent rect. 7 15
212 42.47 temperature 20 1440 > th dose dependent rect. 20 1
251 42.54 humidity 90 43200 > th dose independent rect. 12 14
261 42.56 humidity 90 43200 > th dose independent sin 6 NA
267 42.56 humidity 90 43200 < th dose independent rect. 9 18
269 42.56 radiation 30 43200 > th dose dependent rect. 7 1
288 42.57 humidity 90 43200 > th dose independent rect. 15 11
290 42.57 humidity 90 43200 < th dose independent rect. 8 20
307 42.59 humidity 90 43200 > th dose dependent rect. 23 20
310 42.60 humidity 90 43200 > th dose dependent rect. 24 18
317 42.61 radiation 40 43200 < th dose independent rect. 18 14
322 42.62 radiation 40 43200 < th dose independent rect. 5 3
331 42.63 humidity 90 43200 > th dose independent sin 16 NA
332 42.63 radiation 40 43200 < th dose independent rect. 20 12
335 42.63 humidity 90 43200 < th dose independent rect. 21 22
342 42.64 radiation 40 43200 < th dose independent rect. 22 10
393 42.67 temperature 15 43200 > th dose independent rect. 23 13
396 42.67 humidity 90 43200 < th dose independent rect. 14 22
397 42.67 humidity 90 43200 < th dose independent rect. 17 22
417 42.68 humidity 90 43200 > th dose dependent rect. 11 21
435 42.69 temperature 20 90 > th dose dependent rect. 21 23
446 42.70 humidity 90 43200 < th dose independent rect. 9 23
448 42.70 humidity 90 43200 > th dose dependent rect. 18 22
455 42.71 humidity 90 43200 < th dose independent no NA NA
460 42.71 humidity 90 43200 > th dose dependent sin 5 NA
461 42.71 humidity 90 43200 > th dose dependent no NA NA
483 42.72 humidity 90 43200 > th dose dependent rect. 13 23
502 42.73 humidity 90 43200 > th dose dependent rect. 3 23
503 42.73 humidity 90 43200 > th dose dependent rect. 5 23
521 42.75 temperature 15 43200 > th dose independent sin 9 NA
598 42.79 humidity 90 43200 < th dose independent rect. 2 23
648 42.83 humidity 90 43200 < th dose independent sin 16 NA
684 42.85 humidity 90 43200 < th dose independent rect. 13 13
713 42.87 humidity 90 43200 < th dose independent rect. 21 17
720 42.87 humidity 80 43200 > th dose dependent rect. 9 17
769 42.91 humidity 90 43200 > th dose dependent rect. 3 6
821 42.95 humidity 90 43200 > th dose independent rect. 21 3
830 42.95 humidity 90 43200 > th dose dependent rect. 4 4
839 42.96 temperature 15 43200 < th dose independent sin 9 NA
852 42.97 humidity 90 43200 < th dose independent rect. 17 8
941 43.03 temperature 20 270 > th dose dependent sin 1 NA
958 43.04 humidity 90 43200 > th dose dependent sin 16 NA
993 43.07 radiation 10 4320 < th dose independent rect. 16 1