BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0306000 Os05g0306000|AK071384
         (439 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01010.2  | chr5:1388-4924 REVERSE LENGTH=480                  523   e-149

>AT5G01010.2 | chr5:1388-4924 REVERSE LENGTH=480
          Length = 479

 Score =  523 bits (1347), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/463 (57%), Positives = 324/463 (69%), Gaps = 42/463 (9%)

Query: 2   ATEGLVPITRAYLARYYDKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPITPDEELLEK 61
           +TEGL+PITRA+LA YYDKY                             P +  E  L  
Sbjct: 3   STEGLMPITRAFLASYYDKYPFSPLSDDVSRLSSDMASLIKLLTVQS--PPSQGETSLID 60

Query: 62  EANGIPAHKIDENLWKNREQMEEILLLLNKSRRPVALQQRSTAEDTETFIILDDVETKLK 121
           EAN  P HKIDEN+WKNREQMEEIL LL+ SR PV L++ ST+ED E   IL  ++    
Sbjct: 61  EANRQPPHKIDENMWKNREQMEEILFLLSPSRWPVQLREPSTSEDAEFASILRTLKDSFD 120

Query: 122 DMLKKLEQFQIKNADNVFNTVMTYMPQDFRGTLIRQQRERSERNKQAEVDALVNAGGSIR 181
           +    +  FQ KN++ +F+TVMTYMPQDFRGTLIRQQ+ERSERNKQAEVDALV++GGSIR
Sbjct: 121 NAFTAMISFQTKNSERIFSTVMTYMPQDFRGTLIRQQKERSERNKQAEVDALVSSGGSIR 180

Query: 182 DRYALLWKQQMDRRVQLAQLGSATGVYKTLVRYLVGVPQVLLDFIRQINDDNGPMEEQRE 241
           D YALLWKQQM+RR QLAQLGSATGVYKTLV+YLVGVPQVLLDFIRQINDD+GPMEEQRE
Sbjct: 181 DTYALLWKQQMERRRQLAQLGSATGVYKTLVKYLVGVPQVLLDFIRQINDDDGPMEEQRE 240

Query: 242 RYGPALYTLTKLVLAIRLYLHVSLARYGQRKIEKDDIAVLQQAVAIYTEEFEKFTEFIGE 301
           RYGP LY+LTK+V+AIR++L +   RY   K+ KD + +L +A  +YT EFE+F  FI +
Sbjct: 241 RYGPPLYSLTKMVIAIRVFLTLLWERYDTFKLSKDQMNLLSEAAIVYTSEFERFVTFISD 300

Query: 302 VFVNAPFFISAEDAGA-ESRNSDDYKETIIPAGKTHEVILSVEAVNSYIAWDFSLQQGAL 360
           VF N+PFFISA+ AG   SR++++YKE I+ AG+T+E+ L VE+ NSYIAWDFSL QG +
Sbjct: 301 VFANSPFFISADTAGILWSRDNEEYKEIIVQAGRTYEISLMVESENSYIAWDFSLMQGKI 360

Query: 361 NMVL---------------------------------------DIGFHVEYISPSGQKTL 381
           +M+                                        DIGF VEYI+ SG+KTL
Sbjct: 361 SMLPYIRFLLLYLLLFLPDSGYLCFHTYFCCLSSVYISVVFYQDIGFSVEYINASGEKTL 420

Query: 382 ILPYRRYEADQGNFCTVSAGSYKLVWDNSYSSFFKKSLRYKVD 424
           ILPYRRYEADQGNF T+ AG+YKLVWDNSYS+FFKK+LRYKVD
Sbjct: 421 ILPYRRYEADQGNFSTLMAGNYKLVWDNSYSTFFKKTLRYKVD 463



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,090,467
Number of extensions: 315655
Number of successful extensions: 855
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,310,137
Effective search space: 2800516169
Effective search space used: 2800516169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)