Os05g0299700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Expressed protein (Zinc finger-like protein).
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Os05g0299700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Expressed protein (Zinc finger-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.4 | 0.283 | 13.1 | 1.27 | 1.05 | -1.38 | 0.0354 | 1.19 | 0.448 | 4.51 | 13.73 | 343 | -- | -- |
| 37.28 | 0.284 | 13.1 | 1.12 | 1.06 | -1.29 | -0.107 | -- | 0.413 | 4.37 | 15.3 | 382 | -- | -- |
| 36.38 | 0.281 | 13.1 | 1.27 | 1.05 | -1.38 | -- | 1.16 | 0.447 | 4.45 | 13.92 | 360 | -- | -- |
| 37.3 | 0.284 | 13.1 | 1.08 | 1.05 | -1.32 | -- | -- | 0.399 | 4.4 | 14.9 | 375 | -- | -- |
| 69.2 | 0.387 | 13 | 1.49 | -- | -1.99 | -- | 2.98 | 0.644 | -- | 24.11 | 277 | -- | -- |
| 57.12 | 0.354 | 13.1 | 0.791 | 1.42 | -- | 0.054 | -- | 0.201 | 4.72 | -- | -- | -- | -- |
| 57.13 | 0.354 | 13.1 | 0.791 | 1.42 | -- | -- | -- | 0.201 | 4.72 | -- | -- | -- | -- |
| 71.87 | 0.395 | 13.1 | 1.13 | -- | -1.8 | -- | -- | 0.417 | -- | 24.2 | 259 | -- | -- |
| 65.13 | 0.376 | 13.1 | -- | 1.21 | -0.836 | -- | -- | 0.217 | 4.54 | 11.75 | 367 | -- | -- |
| 164.19 | 0.599 | 13.2 | 0.845 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 73.61 | 0.401 | 13.2 | -- | 1.44 | -- | -- | -- | 0.113 | 4.71 | -- | -- | -- | -- |
| 105.02 | 0.477 | 13.1 | -- | -- | -1.64 | -- | -- | 0.265 | -- | 24.4 | 255 | -- | -- |
| 183 | 0.631 | 13.2 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 10 | 34.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 15 | 34.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 16 | 34.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 62 | 35.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 87 | 36.08 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 92 | 36.12 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 119 | 36.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 132 | 36.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 169 | 36.74 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 182 | 36.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 237 | 37.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 248 | 37.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 346 | 37.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 413 | 38.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 438 | 38.23 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 490 | 38.47 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 525 | 38.65 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 542 | 38.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 648 | 39.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 903 | 39.86 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |