BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0299700 Os05g0299700|AK072411
(174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161 109 6e-25
AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171 99 1e-21
AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162 99 1e-21
AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164 89 1e-18
AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176 87 4e-18
AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177 87 4e-18
AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169 87 6e-18
AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174 78 2e-15
AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131 75 1e-14
AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126 68 3e-12
>AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161
Length = 160
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 57/64 (89%)
Query: 111 FVNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAK 170
VNRC+ CRK+VGLTGFRCRCGELFC HR+S+ H+CS+DYKTAGRE IAR NPV++AAK
Sbjct: 97 IVNRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAK 156
Query: 171 IIKI 174
++K+
Sbjct: 157 MVKV 160
>AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171
Length = 170
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 53/62 (85%)
Query: 113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKII 172
NRC CRKRVGLTGF+CRCG +FC HR+ E H CS+D+K+AGREEIA+ANP+++AAK+
Sbjct: 109 NRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQ 168
Query: 173 KI 174
KI
Sbjct: 169 KI 170
>AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162
Length = 161
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%)
Query: 107 SPVLFVNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVI 166
SP NRC VCRKRVGLTGF CRCG FC HR+ E H C+FD+K+AGREEIA+ANP++
Sbjct: 94 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLV 153
Query: 167 RAAKIIKI 174
AAK+ KI
Sbjct: 154 IAAKLQKI 161
>AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164
Length = 163
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 52/68 (76%)
Query: 107 SPVLFVNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVI 166
P RC CR+RVG+TGFRCRCG +FC HR++E HECSFD+K G+++IA+ANP++
Sbjct: 96 GPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIV 155
Query: 167 RAAKIIKI 174
+A K+ KI
Sbjct: 156 KADKLEKI 163
>AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176
Length = 175
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 105 PLSPVLFVNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANP 164
P PV NRC C K+VG+ GF+C+CG FC HR+ E HECSFD+K GR+ IA+ANP
Sbjct: 106 PSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANP 165
Query: 165 VIRAAKIIKI 174
+++A K+ +I
Sbjct: 166 LVKADKVQRI 175
>AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177
Length = 176
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 112 VNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKI 171
NRC C K+VG+ GF+C+CG FC HR+ ETH+CSFD+K GR EIA+ANPV++A KI
Sbjct: 114 TNRCLCCNKKVGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKI 173
>AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169
Length = 168
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 105 PLSPV-LFVNRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARAN 163
PL P RC C K+VG+TGF+CRCG FC HR+ E+HEC FD+K RE IA+AN
Sbjct: 98 PLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKAN 157
Query: 164 PVIRAAKIIKI 174
PV++A K+ +I
Sbjct: 158 PVVKADKVDRI 168
>AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174
Length = 173
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKII 172
+RC C KRVGLTGF+CRCG LFC HR+++ H+CSF+Y A +E IA+ANPV++A K+
Sbjct: 112 SRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKLD 171
Query: 173 KI 174
KI
Sbjct: 172 KI 173
>AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131
Length = 130
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 114 RCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIK 173
RC +C+++VG+ GF+CRCG +FC HR+ E H C FDYK +GR +A P+IRA K+ +
Sbjct: 70 RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129
Query: 174 I 174
Sbjct: 130 F 130
>AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126
Length = 125
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 117 VCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIKI 174
C+K+VGL GF CRCG LF HR+ E H C DYK+A + +A+ NPV++ K+ ++
Sbjct: 68 ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,229,471
Number of extensions: 60906
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 10
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)