Os05g0292200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor IIA large subunit (TFIIA-L1).
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Os05g0292200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor IIA large subunit (TFIIA-L1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.26 | 0.171 | 12.6 | -0.212 | 0.3 | 0.338 | 0.207 | 0.862 | 0.0389 | 7.86 | 11.37 | 3641 | -- | -- |
| 13.9 | 0.174 | 12.7 | -0.402 | 0.304 | 0.31 | 0.17 | -- | -0.0167 | 7.73 | 12.47 | 3588 | -- | -- |
| 13.36 | 0.17 | 12.6 | -0.207 | 0.3 | 0.326 | -- | 0.833 | 0.0378 | 7.58 | 11.56 | 3467 | -- | -- |
| 13.97 | 0.174 | 12.7 | -0.399 | 0.303 | 0.308 | -- | -- | -0.0137 | 7.58 | 11.72 | 3511 | -- | -- |
| 17.83 | 0.197 | 12.6 | -0.193 | -- | 0.301 | -- | 0.789 | 0.0424 | -- | 11.99 | 2976 | -- | -- |
| 15.56 | 0.185 | 12.7 | -0.273 | 0.29 | -- | 0.125 | -- | 0.0462 | 7.48 | -- | -- | -- | -- |
| 15.59 | 0.185 | 12.7 | -0.27 | 0.291 | -- | -- | -- | 0.0457 | 7.35 | -- | -- | -- | -- |
| 18.46 | 0.2 | 12.7 | -0.404 | -- | 0.299 | -- | -- | -0.00896 | -- | 12.06 | 4286 | -- | -- |
| 17.18 | 0.193 | 12.7 | -- | 0.299 | 0.13 | -- | -- | 0.0559 | 7.48 | 11.57 | 1990 | -- | -- |
| 20.11 | 0.21 | 12.7 | -0.265 | -- | -- | -- | -- | 0.0506 | -- | -- | -- | -- | -- |
| 17.52 | 0.196 | 12.7 | -- | 0.289 | -- | -- | -- | 0.0758 | 7.42 | -- | -- | -- | -- |
| 21.52 | 0.216 | 12.7 | -- | -- | 0.151 | -- | -- | 0.0575 | -- | 12.71 | 1396 | -- | -- |
| 21.97 | 0.219 | 12.7 | -- | -- | -- | -- | -- | 0.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 3 | 12.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 4 | 12.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 5 | 12.90 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 7 | 12.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 10 | 12.97 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 11 | 12.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 13 | 12.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 14 | 12.97 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 17 | 12.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 13 |
| 27 | 13.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 73 | 13.03 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 23 |
| 134 | 13.05 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 257 | 13.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 323 | 13.11 | temperature | 15 | 4320 | > th | dose dependent | sin | 10 | NA |
| 326 | 13.11 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 328 | 13.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 331 | 13.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 452 | 13.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 531 | 13.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 532 | 13.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 533 | 13.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 535 | 13.16 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 559 | 13.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 577 | 13.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 626 | 13.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 674 | 13.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 680 | 13.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 731 | 13.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 736 | 13.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 738 | 13.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 741 | 13.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 794 | 13.21 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 20 |
| 849 | 13.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 850 | 13.22 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 24 | 1 |
| 858 | 13.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 875 | 13.22 | temperature | 30 | 10 | < th | dose independent | rect. | 24 | 14 |
| 913 | 13.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |