BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0292200 Os05g0292200|AK065373
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07480.1 | chr1:2296706-2299215 REVERSE LENGTH=376 235 3e-62
AT1G07470.1 | chr1:2291723-2294350 FORWARD LENGTH=376 230 1e-60
AT5G59230.1 | chr5:23901555-23902379 FORWARD LENGTH=187 74 9e-14
>AT1G07480.1 | chr1:2296706-2299215 REVERSE LENGTH=376
Length = 375
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 163/407 (40%), Positives = 216/407 (53%), Gaps = 50/407 (12%)
Query: 3 SSNVSTVYISVIDDVISKVRDDFISYG-VGDAVLNELQALWEMKMLHCGAISGTIDRSKX 61
++ S VYI VI+DV++KVR++FI+ G G++VL+ELQ +WE KM+ G ++G I+RS
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 62 XXXXXXXXXXXXXXXXVHDLNVPYEATSEEYATPTADMLFXXXXXXXXXXXXXXGT--DA 119
HDLNVPYE T EEY TPTA+MLF GT ++
Sbjct: 64 QKPTPGGPL-------THDLNVPYEGT-EEYETPTAEMLFPPTPLQTPLPTPLPGTADNS 115
Query: 120 GMYNIPTGPSDYAPSPISDVRNGMAMNGADPKTGRXXXXXXXXXXWMTQRPLGVDVNVAY 179
MYNIPTG SDY P NG+ ++ R W R +DVNVAY
Sbjct: 116 SMYNIPTGSSDY---PTPGTENGVNID----VKARPSPYMPPPSPWTNPR---LDVNVAY 165
Query: 180 VENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSK 239
V+ R++P+R Q T+D + SSGKRKRD+ G +G +PQQDG+ D I E
Sbjct: 166 VDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFEC 225
Query: 240 DNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQRDG-MDDYNDP-------FYFQGVPT 291
D + +SI +++ SS+ + IPQ DG M D D + +QG P+
Sbjct: 226 DAFR--ITSIGDRKVPRDFFSSSSK------IPQVDGPMPDPYDEMLSTPNIYSYQG-PS 276
Query: 292 EDYNTPGESSEYRAPTP-AVGTPKP---RNDVGXXXXXXXXXXXXXXXXXXXXXXXXXXX 347
E++N E R P P + T P +ND+
Sbjct: 277 EEFN------EARTPAPNEIQTSTPVAVQNDI--IEDDEELLNEDDDDDELDDLESGEDM 328
Query: 348 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 394
NTQHLVLAQFDKVTRTK+RWKC+LKDGIMH+N +D+LFNKA GEFDF
Sbjct: 329 NTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375
>AT1G07470.1 | chr1:2291723-2294350 FORWARD LENGTH=376
Length = 375
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/399 (38%), Positives = 204/399 (51%), Gaps = 34/399 (8%)
Query: 3 SSNVSTVYISVIDDVISKVRDDFISYG-VGDAVLNELQALWEMKMLHCGAISGTIDRSKX 61
++ S VYI VI+DV++KVR++FI+ G G++VL+ELQ +WE KM+ G ++G I+RS
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 62 XXXXXXXXXXXXXXXXVHDLNVPYEATSEEYATPTADMLFXXXXXXXXXXXXXXGT--DA 119
HDLNVPYE T EEY TPTA+MLF GT ++
Sbjct: 64 QKPTPGGPL-------THDLNVPYEGT-EEYETPTAEMLFPPTPLQTPLPTPLPGTADNS 115
Query: 120 GMYNIPTGPSDYAPSPISDVRNGMAMNGADPKTGRXXXXXXXXXXWMTQRPLGVDVNVAY 179
MYNIPTG SDY P NG+ ++ R W R +DVNVAY
Sbjct: 116 SMYNIPTGSSDY---PTPGTENGVNID----VKARPSPYMPPPSPWTNPR---LDVNVAY 165
Query: 180 VENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPSGSFVPQQDGSADQIVEFVVSK 239
V+ R++P+R Q T+D + SSGKRKRD+ +G +PQQDG++D I E
Sbjct: 166 VDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEANFEC 225
Query: 240 DNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQRDGMDDYNDPFYFQGVPTEDYNTPGE 299
+ + SS + P D M + + +QG P E++N
Sbjct: 226 AALRITYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG-PNEEFN---- 280
Query: 300 SSEYRAPTP-AVGTPKPR---NDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLA 355
E R P P + T P ND+ NTQHLVLA
Sbjct: 281 --EARTPAPNEIQTSTPVAVPNDI--IEDDEELLNEDDDDDELDDLESGEDMNTQHLVLA 336
Query: 356 QFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 394
QFDKVTRTK+RWKC+LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 337 QFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375
>AT5G59230.1 | chr5:23901555-23902379 FORWARD LENGTH=187
Length = 186
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 348 NTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 394
N QHLV+ QFDKV R+KN+W+C G+M +NG++VLF++ATG+F+F
Sbjct: 140 NIQHLVMCQFDKVKRSKNKWECKFNAGVMQINGKNVLFSQATGDFNF 186
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 1 MASSNVSTVYISVIDDVISKVRDDFISYG-VGDAVLNELQALWEMKMLHCGAISGTIDRS 59
+++S+ S+ Y VIDDVI+K R D + G + ++VL+++Q++W+ KM+ GA+SGTI+ S
Sbjct: 3 LSTSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETS 62
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,632,684
Number of extensions: 291402
Number of successful extensions: 787
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 6
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)