Os05g0279600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0279600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.38 | 0.205 | 9.56 | 0.0145 | 0.581 | 0.435 | 0.116 | -0.151 | 0.186 | 19 | 10 | 30 | -- | -- |
| 19.52 | 0.206 | 9.56 | 0.0145 | 0.581 | 0.435 | 0.116 | -- | 0.186 | 19 | 10 | 30 | -- | -- |
| 19.4 | 0.205 | 9.56 | 0.0145 | 0.581 | 0.435 | -- | -0.151 | 0.186 | 19 | 10 | 30 | -- | -- |
| 19.46 | 0.205 | 9.56 | 0.0144 | 0.583 | 0.432 | -- | -- | 0.186 | 18.9 | 9.77 | 31 | -- | -- |
| 36.26 | 0.28 | 9.56 | -0.00554 | -- | 0.506 | -- | -0.242 | 0.167 | -- | 9.77 | 23 | -- | -- |
| 24.59 | 0.232 | 9.57 | 0.0535 | 0.81 | -- | -0.0349 | -- | 0.172 | 21.2 | -- | -- | -- | -- |
| 24.59 | 0.232 | 9.57 | 0.0547 | 0.81 | -- | -- | -- | 0.172 | 21.2 | -- | -- | -- | -- |
| 36.21 | 0.28 | 9.56 | 0.00376 | -- | 0.515 | -- | -- | 0.156 | -- | 9.957 | 16 | -- | -- |
| 19.47 | 0.205 | 9.56 | -- | 0.584 | 0.436 | -- | -- | 0.185 | 18.9 | 9.76 | 31 | -- | -- |
| 62.7 | 0.37 | 9.55 | 0.0578 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 24.67 | 0.232 | 9.58 | -- | 0.81 | -- | -- | -- | 0.166 | 21.2 | -- | -- | -- | -- |
| 36.21 | 0.28 | 9.56 | -- | -- | 0.515 | -- | -- | 0.156 | -- | 9.954 | 16 | -- | -- |
| 62.78 | 0.37 | 9.55 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.19 | radiation | 10 | 30 | < th | dose independent | rect. | 2 | 17 |
| 3 | 18.33 | radiation | 10 | 30 | < th | dose independent | sin | 1 | NA |
| 6 | 18.49 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 10 | 18.57 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 14 |
| 13 | 18.70 | radiation | 20 | 30 | < th | dose dependent | sin | 1 | NA |
| 33 | 18.93 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 45 | 19.05 | radiation | 10 | 30 | < th | dose independent | rect. | 12 | 22 |
| 56 | 19.08 | radiation | 10 | 30 | > th | dose independent | sin | 1 | NA |
| 57 | 19.08 | radiation | 20 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 78 | 19.24 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 155 | 19.37 | radiation | 10 | 30 | < th | dose independent | rect. | 15 | 23 |
| 161 | 19.38 | radiation | 10 | 30 | < th | dose independent | no | NA | NA |
| 162 | 19.38 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 23 |
| 189 | 19.42 | radiation | 10 | 30 | < th | dose independent | rect. | 22 | 23 |
| 255 | 19.53 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 281 | 19.61 | radiation | 10 | 30 | > th | dose independent | no | NA | NA |
| 367 | 19.62 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 372 | 19.62 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 382 | 19.65 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 395 | 19.68 | radiation | 10 | 30 | < th | dose independent | rect. | 17 | 23 |
| 450 | 19.75 | radiation | 40 | 270 | < th | dose independent | rect. | 12 | 6 |
| 456 | 19.76 | radiation | 10 | 30 | < th | dose independent | rect. | 24 | 23 |
| 482 | 19.81 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 6 |
| 547 | 19.92 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 561 | 19.94 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 9 |
| 568 | 19.95 | radiation | 10 | 30 | < th | dose independent | rect. | 2 | 12 |
| 580 | 19.95 | radiation | 20 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 627 | 20.01 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 7 |
| 648 | 20.02 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 662 | 20.05 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 9 |
| 680 | 20.05 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 730 | 20.10 | atmosphere | 995 | 270 | > th | dose independent | rect. | 13 | 6 |
| 868 | 20.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 886 | 20.15 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 1 | 18 |
| 915 | 20.18 | humidity | 50 | 270 | > th | dose independent | rect. | 19 | 18 |
| 931 | 20.18 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 971 | 20.23 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 2 | 18 |
| 998 | 20.25 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 10 |