BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0279600 Os05g0279600|AK070566
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30900.1  | chr4:15040021-15042203 FORWARD LENGTH=317          332   6e-92

>AT4G30900.1 | chr4:15040021-15042203 FORWARD LENGTH=317
          Length = 316

 Score =  332 bits (852), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 151/180 (83%), Positives = 167/180 (92%)

Query: 14  TFQLKQVEPPGFSFQIVNTNLDEDSPRARRRSALLTWQHIASLPPNLPVIYCGGFNTQKE 73
           TFQLK  EPPGFSFQIVNTNLDE SPRARRRSALLTWQHIASLPP LPV+YCGGFNTQKE
Sbjct: 124 TFQLKGAEPPGFSFQIVNTNLDEISPRARRRSALLTWQHIASLPPTLPVVYCGGFNTQKE 183

Query: 74  SMTGRFLLGRSREHGVVGDMRDAWPNARVRKNVSLIHTYHGFKGEKQGALEFLKLIFRAL 133
           S TGRFLLGRSREHGVVGDMRDAWP+ARVRKNV+LI TYH FKG+KQG +EFLKLIFRAL
Sbjct: 184 STTGRFLLGRSREHGVVGDMRDAWPSARVRKNVALIRTYHDFKGDKQGTVEFLKLIFRAL 243

Query: 134 CLCWDRQTQDLHIDWILFRGRPLVPALCEVINDNIDGVYPSSHFPIFAEFLLPRSVRLVE 193
           CLCWDRQTQDLH DWIL+RGR +VP +CE++ND ID +YPSSH+P+FAEF+LPRSVR++E
Sbjct: 244 CLCWDRQTQDLHTDWILYRGRSIVPVMCEIVNDKIDDLYPSSHYPVFAEFMLPRSVRMLE 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.142    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,808,859
Number of extensions: 205477
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)