Os05g0270500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease P-related protein family protein.
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Os05g0270500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease P-related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.29 | 0.267 | 3.2 | 0.159 | 0.164 | 0.238 | -0.186 | 1.08 | -0.0684 | 6.99 | 90.96 | 5916 | -- | -- |
| 33.78 | 0.271 | 3.2 | 0.0823 | 0.18 | 0.3 | -0.237 | -- | -0.103 | 6.57 | 111.1 | 4565 | -- | -- |
| 32.37 | 0.265 | 3.2 | 0.157 | 0.165 | 0.24 | -- | 1.09 | -0.0691 | 7.25 | 91 | 5928 | -- | -- |
| 33.9 | 0.271 | 3.2 | 0.0786 | 0.172 | 0.299 | -- | -- | -0.101 | 6.93 | 131.6 | 4489 | -- | -- |
| 33.77 | 0.271 | 3.2 | 0.161 | -- | 0.236 | -- | 1.09 | -0.0634 | -- | 91 | 5853 | -- | -- |
| 34.89 | 0.277 | 3.18 | 0.068 | 0.162 | -- | -0.207 | -- | -0.0367 | 6.91 | -- | -- | -- | -- |
| 34.99 | 0.277 | 3.18 | 0.0648 | 0.161 | -- | -- | -- | -0.0359 | 7.24 | -- | -- | -- | -- |
| 35.29 | 0.277 | 3.2 | 0.0815 | -- | 0.294 | -- | -- | -0.0946 | -- | 137.4 | 4304 | -- | -- |
| 34.07 | 0.272 | 3.2 | -- | 0.17 | 0.291 | -- | -- | -0.107 | 6.92 | 132.8 | 4466 | -- | -- |
| 36.37 | 0.282 | 3.19 | 0.0677 | -- | -- | -- | -- | -0.0331 | -- | -- | -- | -- | -- |
| 35.1 | 0.277 | 3.19 | -- | 0.162 | -- | -- | -- | -0.0431 | 7.22 | -- | -- | -- | -- |
| 35.47 | 0.277 | 3.2 | -- | -- | 0.286 | -- | -- | -0.102 | -- | 146 | 4301 | -- | -- |
| 36.49 | 0.282 | 3.19 | -- | -- | -- | -- | -- | -0.0406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.33 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 31.39 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 4 | 31.46 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 5 | 31.47 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 6 | 31.47 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 12 | 31.69 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 32 | 31.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 33 | 31.90 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 39 | 32.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 41 | 32.02 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 46 | 32.04 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 47 | 32.05 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 50 | 32.06 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 59 | 32.07 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 60 | 32.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 63 | 32.07 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 67 | 32.07 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 76 | 32.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 77 | 32.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 97 | 32.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 112 | 32.09 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 117 | 32.10 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 121 | 32.11 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 123 | 32.11 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 127 | 32.12 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 129 | 32.12 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 130 | 32.12 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 135 | 32.12 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 137 | 32.12 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 142 | 32.12 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 143 | 32.12 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 146 | 32.12 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 151 | 32.12 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 156 | 32.14 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 163 | 32.16 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 178 | 32.18 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 183 | 32.19 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 184 | 32.19 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 201 | 32.21 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 205 | 32.24 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 213 | 32.29 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 247 | 32.39 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 249 | 32.39 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 264 | 32.43 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 267 | 32.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 269 | 32.44 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 271 | 32.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 279 | 32.45 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 282 | 32.46 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 321 | 32.47 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 323 | 32.47 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 330 | 32.48 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 4 | 11 |
| 367 | 32.50 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 380 | 32.50 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 414 | 32.52 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 416 | 32.52 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 423 | 32.52 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 430 | 32.53 | humidity | 70.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 447 | 32.53 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 511 | 32.54 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 602 | 32.56 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 623 | 32.57 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 627 | 32.57 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 659 | 32.58 | humidity | 70.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 695 | 32.58 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 744 | 32.59 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 961 | 32.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 987 | 32.65 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |