BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0270500 Os05g0270500|J065089J07
         (59 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04635.1  | chr1:1291350-1291805 FORWARD LENGTH=152             74   2e-14

>AT1G04635.1 | chr1:1291350-1291805 FORWARD LENGTH=152
          Length = 151

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 1  MVHFKNRYMVMEAFIDTAGKD---QSDPLILTQLNSTKAIRDSIQINFGECGLAACLGSL 57
          MV FKNRYM+ME F+D   KD   +  P+ILTQ N +KAI+DSI +NFGECGL + LGS 
Sbjct: 1  MVGFKNRYMLMEVFLD-PDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSF 59

Query: 58 Q 58
          Q
Sbjct: 60 Q 60



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,088,744
Number of extensions: 27126
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 59
Length of database: 11,106,569
Length adjustment: 32
Effective length of query: 27
Effective length of database: 10,229,257
Effective search space: 276189939
Effective search space used: 276189939
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)