Os05g0269800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transposase, IS4 domain containing protein.
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Os05g0269800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transposase, IS4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 326.92 | 0.85 | 7.34 | 2.73 | 3.68 | 1.39 | -1.98 | 5.35 | 0.965 | 21 | 21.01 | 1369 | -- | -- |
| 369.87 | 0.896 | 7.52 | 1.59 | 3.73 | 1.23 | -1.72 | -- | 0.497 | 20.7 | 24.4 | 2598 | -- | -- |
| 338.88 | 0.857 | 7.34 | 2.84 | 3.69 | 1.38 | -- | 5.35 | 0.964 | 21 | 21.1 | 1371 | -- | -- |
| 380.23 | 0.908 | 7.53 | 1.56 | 3.63 | 1.14 | -- | -- | 0.57 | 20.8 | 24.4 | 2577 | -- | -- |
| 1054.83 | 1.51 | 7.36 | 2.65 | -- | 2.15 | -- | 4.97 | 0.714 | -- | 25 | 2156 | -- | -- |
| 405.45 | 0.944 | 7.45 | 1.91 | 3.7 | -- | -1.83 | -- | 0.93 | 21 | -- | -- | -- | -- |
| 416.95 | 0.956 | 7.45 | 1.97 | 3.7 | -- | -- | -- | 0.931 | 21 | -- | -- | -- | -- |
| 845.4 | 1.35 | 7.67 | 1.37 | -- | 2.69 | -- | -- | 0.205 | -- | 25.5 | 664 | -- | -- |
| 426.94 | 0.962 | 7.55 | -- | 3.57 | 1.73 | -- | -- | 0.381 | 21.1 | 21 | 8008 | -- | -- |
| 1204.01 | 1.62 | 7.35 | 1.98 | -- | -- | -- | -- | 0.908 | -- | -- | -- | -- | -- |
| 519.62 | 1.07 | 7.5 | -- | 3.7 | -- | -- | -- | 0.711 | 21.1 | -- | -- | -- | -- |
| 845.17 | 1.35 | 7.63 | -- | -- | 3.01 | -- | -- | -0.322 | -- | 25.2 | 653 | -- | -- |
| 1307.32 | 1.69 | 7.4 | -- | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 4 | 318.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 5 | 319.17 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 9 | 320.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 15 | 322.16 | temperature | 25 | 270 | < th | dose dependent | sin | 1 | NA |
| 17 | 322.40 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 61 | 326.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 63 | 326.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 106 | 327.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 129 | 328.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 135 | 328.33 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 169 | 328.88 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 328 | 331.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 350 | 331.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 360 | 331.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 433 | 332.85 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 456 | 333.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 577 | 334.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 628 | 335.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 633 | 335.69 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 19 |
| 671 | 336.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 717 | 336.97 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 732 | 337.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 767 | 337.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 817 | 338.27 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 938 | 339.87 | temperature | 20 | 1440 | > th | dose independent | sin | 0 | NA |
| 999 | 340.75 | temperature | 20 | 1440 | < th | dose independent | sin | 0 | NA |