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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0269100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0217) R2 : 0.137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.389 (0.0456) R2dN8 : 0.177 R2N8 : 0.137
σ : 0.408
deviance : 76.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.2 0.326 11.3 0.515 0.262 -0.612 -1.41 1.23 0.441 10.2 0.14 35 -- --
50.12 0.33 11.3 0.47 0.291 -0.625 -0.0112 -- 0.44 10.4 0.138 29 -- --
50.11 0.332 11.3 0.428 0.21 -0.541 -- 0.224 0.427 9.15 0.14 35 -- --
50.08 0.33 11.3 0.446 0.286 -0.628 -- -- 0.43 10.5 0.1343 29 -- --
51.33 0.335 11.3 0.421 -- -0.432 -- 0.205 0.429 -- 0.1398 36 -- --
57.7 0.356 11.3 0.373 0.483 -- -0.141 -- 0.423 0.665 -- -- -- --
57.78 0.356 11.3 0.378 0.483 -- -- -- 0.424 0.614 -- -- -- --
51.16 0.333 11.3 0.416 -- -0.439 -- -- 0.43 -- 0.13 36 -- --
55.11 0.348 11.3 -- 0.173 -0.498 -- -- 0.379 8.32 0.14 29 -- --
72.39 0.398 11.3 0.395 -- -- -- -- 0.433 -- -- -- -- --
61.55 0.367 11.3 -- 0.489 -- -- -- 0.382 0.651 -- -- -- --
55.93 0.348 11.3 -- -- -0.44 -- -- 0.363 -- 0.17 21 -- --
76.52 0.408 11.3 -- -- -- -- -- 0.389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.77 temperature 20 10 > th dose independent rect. 18 11
3 47.10 temperature 15 10 > th dose dependent rect. 7 22
11 47.89 temperature 20 270 > th dose dependent rect. 17 20
13 47.95 temperature 15 270 > th dose dependent rect. 18 9
17 48.07 temperature 20 10 > th dose independent rect. 21 8
23 48.24 temperature 20 90 > th dose independent rect. 7 21
26 48.34 humidity 80 14400 < th dose independent rect. 5 1
27 48.34 humidity 80 14400 < th dose dependent rect. 5 1
28 48.35 humidity 80 14400 > th dose independent rect. 4 1
32 48.38 temperature 15 10 > th dose dependent rect. 21 8
34 48.41 temperature 20 10 > th dose independent rect. 8 21
40 48.50 humidity 50 10 > th dose dependent rect. 18 11
55 48.58 atmosphere 1000 30 > th dose independent rect. 5 13
66 48.66 temperature 20 90 > th dose independent rect. 9 19
136 48.96 radiation 1 30 < th dose dependent rect. 6 23
149 49.01 radiation 1 30 < th dose dependent sin 11 NA
181 49.14 radiation 1 30 < th dose dependent no NA NA
183 49.14 radiation 1 30 < th dose dependent rect. 11 21
190 49.14 radiation 1 30 < th dose dependent rect. 13 23
191 49.14 radiation 1 30 < th dose dependent rect. 15 23
195 49.16 radiation 1 30 < th dose dependent rect. 11 18
204 49.17 radiation 1 30 < th dose dependent rect. 13 19
212 49.18 radiation 1 30 < th dose dependent rect. 13 16
218 49.18 radiation 1 30 < th dose dependent rect. 17 23
272 49.36 temperature 10 30 > th dose dependent rect. 18 11
284 49.39 temperature 20 1440 < th dose independent rect. 4 1
299 49.42 temperature 20 1440 > th dose independent rect. 4 1
306 49.44 radiation 1 30 < th dose dependent rect. 15 21
311 49.46 temperature 20 1440 > th dose dependent rect. 1 2
312 49.46 radiation 1 30 < th dose dependent rect. 15 17
325 49.48 radiation 1 30 < th dose dependent rect. 15 14
376 49.59 wind 3 43200 < th dose dependent rect. 23 3
408 49.65 temperature 25 4320 < th dose independent rect. 24 1
417 49.67 temperature 30 270 < th dose dependent rect. 15 16
455 49.74 temperature 25 270 < th dose dependent rect. 10 21
463 49.77 radiation 1 30 < th dose independent sin 11 NA
473 49.78 temperature 20 10 > th dose dependent rect. 21 19
488 49.80 radiation 1 10 < th dose independent rect. 18 23
496 49.81 temperature 25 4320 > th dose independent rect. 24 1
504 49.82 temperature 25 1440 < th dose independent rect. 24 3
546 49.89 temperature 25 90 < th dose dependent rect. 23 23
617 50.02 radiation 1 30 < th dose dependent rect. 18 20
625 50.04 radiation 1 10 > th dose independent sin 10 NA
635 50.06 temperature 20 10 > th dose dependent rect. 23 23
646 50.09 humidity 70 10 > th dose independent rect. 18 11
647 50.09 wind 3 43200 < th dose dependent rect. 21 6
652 50.10 temperature 25 90 < th dose dependent no NA NA
659 50.11 temperature 25 270 < th dose independent rect. 15 16
685 50.15 temperature 25 270 < th dose independent sin 10 NA
692 50.15 temperature 25 90 < th dose dependent rect. 15 23
703 50.16 temperature 20 10 > th dose dependent rect. 3 23
705 50.17 temperature 30 10 < th dose independent rect. 18 11
707 50.17 temperature 20 10 > th dose dependent no NA NA
714 50.18 radiation 1 30 < th dose dependent rect. 18 18
720 50.19 radiation 1 30 < th dose independent rect. 6 23
721 50.19 radiation 1 30 < th dose dependent rect. 18 14
726 50.19 temperature 20 10 > th dose dependent rect. 21 23
741 50.21 temperature 25 90 < th dose dependent rect. 19 23
742 50.21 temperature 25 270 < th dose dependent rect. 21 23
748 50.22 temperature 20 10 > th dose dependent rect. 1 23
750 50.22 temperature 20 10 > th dose dependent rect. 15 23
756 50.23 temperature 20 720 > th dose dependent rect. 6 1
759 50.23 radiation 1 10 < th dose dependent rect. 18 12
767 50.23 temperature 25 90 < th dose dependent rect. 17 23
779 50.24 temperature 20 10 > th dose dependent rect. 9 23
860 50.34 temperature 20 10 > th dose dependent rect. 11 23
864 50.34 radiation 1 30 < th dose dependent rect. 21 23
866 50.35 temperature 30 30 < th dose independent rect. 5 13
887 50.37 temperature 25 90 < th dose dependent rect. 3 23
900 50.38 temperature 20 30 > th dose dependent rect. 13 23
904 50.39 radiation 1 10 < th dose independent rect. 18 20
907 50.39 wind 9 14400 > th dose dependent rect. 12 1
908 50.39 temperature 10 1440 > th dose dependent rect. 23 2
925 50.40 temperature 30 270 < th dose dependent sin 10 NA
933 50.41 temperature 25 270 > th dose independent rect. 17 20
941 50.42 wind 1 43200 < th dose independent rect. 9 4
983 50.47 radiation 1 30 < th dose independent rect. 11 18
995 50.48 wind 3 14400 < th dose independent rect. 2 1
996 50.48 radiation 1 10 < th dose independent rect. 18 18