BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0269100 Os05g0269100|AK066309
(431 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50870.1 | chr1:18855147-18856337 FORWARD LENGTH=397 52 6e-07
AT1G15680.1 | chr1:5393407-5394639 FORWARD LENGTH=411 51 1e-06
AT5G03970.1 | chr5:1071721-1072977 REVERSE LENGTH=419 49 4e-06
AT2G31470.1 | chr2:13407492-13408655 REVERSE LENGTH=388 49 6e-06
>AT1G50870.1 | chr1:18855147-18856337 FORWARD LENGTH=397
Length = 396
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 25 DILIEVLLRLPPWSLCQLRCVCKLWLERTTSSTFLSAYAERHTTNPS--NWFLLDRTIFI 82
D+++E+LLRLP S+ + RCV KLWL TT F ++Y R +T PS +F +F+
Sbjct: 34 DLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSYEARSSTRPSLLMFFKNKDKLFV 93
Query: 83 DTAP 86
T P
Sbjct: 94 FTFP 97
>AT1G15680.1 | chr1:5393407-5394639 FORWARD LENGTH=411
Length = 410
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 41/255 (16%)
Query: 25 DILIEVLLRLPPWSLCQLRCVCKLWLERTTSSTFLSAYAERHTTNPSNWFLLDRTIFIDT 84
++L E++ RLP S+ + + VCK W S+ F + H + S+W L+ T
Sbjct: 22 ELLAEIVARLPFISITRFKSVCKGWRSLIESTYFRHLFVFAHRNSSSSWSLVCGT--FGW 79
Query: 85 APTPRGPIRALLRNSEPPKVSSIITSSRMCSIHRKESFYDQLPMVVSYSGGLILL--TGN 142
+ R P ++ S I + H+ +V+ + GL+LL
Sbjct: 80 SVEEMAGFYGCKRYGLPRRLGSYIPPHGLVDKHK----------IVACTDGLVLLQTVTK 129
Query: 143 ENNYYVCNPFTGDTFLLPVPKPQLRNAES---LGIVARDGEYVVAELMMSC--------- 190
+ V +P LP P P + S +G+V R + VV E + C
Sbjct: 130 RETFSVGSPVLRQWVQLP-PHPWKGISSSVLAIGLVTRVEDGVVMEYKVVCMDIDYRWEV 188
Query: 191 ----LRSFSSVNGRWEEKPLVCPQFSRG---DMVFSSGGMLHWVDLNC-------GILSC 236
L +SS+ G W K + CP S MLHW+D + I++
Sbjct: 189 ESLILEIYSSLTGTWTRKKVRCPSLIVSLSYKRCLSLKKMLHWLDTHYRCRSSVGAIVAY 248
Query: 237 DPFASEPTVLFINLP 251
D +A + F +P
Sbjct: 249 DVYADDDEQQFRIIP 263
>AT5G03970.1 | chr5:1071721-1072977 REVERSE LENGTH=419
Length = 418
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 129/350 (36%), Gaps = 77/350 (22%)
Query: 5 LPVSAGDASRVLFTGIRDHTDILIEVLLRLPPWSLCQLRCVCKLWLERTTSSTFLSAYAE 64
L + G S + + + D + E+L+ LPP ++ +L V K WLE S F Y
Sbjct: 7 LKTNLGMTSALSTHEVLNSNDTMCEILILLPPETIYKLILVSKRWLEIIASPCFRHTYLA 66
Query: 65 RHTTN--------PSNWFLLDRTIFIDTAPTPRG-PIRALLRNSEPPKVSSIITSSRMCS 115
+ N S+ +L R ID PR P LL SSI
Sbjct: 67 KWKPNFELIGFFVCSSMYLGRR---IDGTRRPRAEPSLPLL------STSSIGDEIESSG 117
Query: 116 IHRKESFYDQLPMVVSYSGGLILLTGNENNYYVCNPFTGDTFLLPVPKPQLRNAESLGIV 175
I +K +Y + + GL+L + YY+ +P T LP P+ + ++
Sbjct: 118 ILKKLGYY------IDSADGLLLCGRHPKAYYLWDPSTQKQQQLPRPRVHFEEL-CMSLI 170
Query: 176 ARDG-------EYVVAELMMSCLRS-------FSSVNGRWEEKPLVCPQ------FSRGD 215
+ D + V AE + + S FSS W L+C + ++ G
Sbjct: 171 SEDSPDQGFSYKVVRAECVAFPVNSTKVKVETFSSKTSTWSYSELICLEPLSLSPWTPGR 230
Query: 216 MVFSSGGMLHWVDLNCGILSCDPFASEPTVLFINLPEASGRPTRGLDEWIHMRYVGVSAG 275
++ G+++W I D + E + I LP+ + L E
Sbjct: 231 VI---KGVVYWHARGGKIAIYDSNSEEKRIDVIKLPKTYDYDEQVLGE------------ 275
Query: 276 RLCFFDIDEDDG-------ESGSMSLWALG--GNSGEWVLEYKVDFEDLW 316
DDG M +W L GN EW L +KV+F+ +W
Sbjct: 276 --------TDDGSLQYGWSNKSVMEVWKLEKVGNVLEWNLLFKVNFKAMW 317
>AT2G31470.1 | chr2:13407492-13408655 REVERSE LENGTH=388
Length = 387
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 26/154 (16%)
Query: 25 DILIEVLLRLPPWSLCQLRCVCKLWLERTTSSTFLSAYAERHTTNPSNWFLLD--RTIFI 82
D++IE+ R P S+ + RCV KLW F Y + P F R +F
Sbjct: 28 DLVIEIFSRSPVKSIARCRCVSKLWASILRLPYFTELYLTKSCARPRLLFACQKHRELFF 87
Query: 83 DTAPTPRGPIRALLRNSEPPKVSSIITSSRMCSIHRKESFYDQLPMVVSYSGGLI----- 137
+ P P P + +S S H K F D ++S GGL+
Sbjct: 88 FSTPQPHNPNES--------------SSPLAASFHMKIPF-DGRFNIISPIGGLVFVRYE 132
Query: 138 -LLTGNENNYYV---CNPFTGDTFLLPVPKPQLR 167
+L G + +V CNP TG + LP PK + R
Sbjct: 133 QILKGRKTPEFVSAICNPSTGQSLTLPKPKTRKR 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,345,269
Number of extensions: 471267
Number of successful extensions: 1212
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 6
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)