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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0250500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0258) R2 : 0.00537
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0851 (0.0543) R2dN8 : 0.00693 R2N8 : 0.00537
σ : 0.485
deviance : 108.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.8 0.479 2.95 -0.0952 0.16 0.942 -0.119 -2.54 0.0967 5.83 55 15 -- --
105.9 0.479 2.94 -0.104 0.152 0.349 -0.165 -- 0.0874 6.66 58.22 15 -- --
103.8 0.475 2.95 -0.0988 0.16 0.981 -- -2.6 0.098 5.68 55 16 -- --
105.92 0.479 2.94 -0.115 0.16 0.36 -- -- 0.0851 5.88 58.44 15 -- --
105.11 0.478 2.95 -0.0915 -- 0.91 -- -2.58 0.0994 -- 54.92 16 -- --
106.72 0.484 2.95 -0.0949 0.134 -- -0.285 -- 0.0714 7.37 -- -- -- --
106.9 0.484 2.95 -0.102 0.138 -- -- -- 0.0714 6.68 -- -- -- --
107.2 0.482 2.95 -0.109 -- 0.3 -- -- 0.0838 -- 58 15 -- --
106.26 0.48 2.94 -- 0.158 0.343 -- -- 0.0979 5.91 59 15 -- --
107.89 0.485 2.95 -0.0991 -- -- -- -- 0.0741 -- -- -- -- --
107.18 0.484 2.94 -- 0.136 -- -- -- 0.0828 6.73 -- -- -- --
107.51 0.483 2.95 -- -- 0.284 -- -- 0.0971 -- 58 15 -- --
108.15 0.485 2.95 -- -- -- -- -- 0.0851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.43 wind 1.0 90 < th dose dependent rect. 4 1
2 96.92 wind 1.0 90 < th dose independent rect. 4 1
10 101.56 atmosphere 1005.0 90 > th dose dependent rect. 5 1
28 102.43 humidity 90.0 10 > th dose dependent rect. 6 1
31 102.58 wind 1.0 90 < th dose dependent rect. 1 8
38 102.66 temperature 20.0 90 < th dose independent rect. 4 1
39 102.66 temperature 20.0 10 < th dose independent rect. 4 2
44 102.69 wind 5.0 4320 > th dose independent rect. 1 2
50 102.76 wind 5.0 4320 < th dose independent rect. 1 2
51 102.76 wind 5.0 4320 > th dose independent rect. 24 4
52 102.78 wind 5.0 4320 > th dose dependent rect. 23 5
60 102.80 wind 5.0 4320 < th dose independent rect. 24 4
61 102.83 wind 5.0 4320 > th dose dependent rect. 1 1
87 103.00 radiation 1.0 30 < th dose independent rect. 5 1
103 103.11 radiation 1.0 90 < th dose dependent rect. 5 2
114 103.18 humidity 60.0 10 < th dose dependent sin 9 NA
119 103.20 humidity 60.0 90 < th dose independent rect. 18 17
122 103.22 humidity 60.0 90 < th dose independent rect. 16 19
130 103.25 humidity 60.0 90 < th dose independent rect. 9 2
157 103.29 humidity 90.0 4320 > th dose independent rect. 14 1
173 103.36 wind 1.0 14400 < th dose independent rect. 15 1
178 103.36 radiation 40.0 43200 > th dose dependent rect. 8 2
180 103.36 radiation 20.0 43200 < th dose dependent rect. 3 3
206 103.37 radiation 20.0 43200 < th dose dependent rect. 21 9
236 103.39 humidity 60.0 90 < th dose independent sin 10 NA
246 103.41 radiation 1.0 43200 > th dose dependent rect. 5 1
249 103.41 radiation 10.0 43200 < th dose dependent rect. 13 2
250 103.41 humidity 60.0 270 < th dose dependent rect. 8 3
285 103.43 wind 1.0 14400 > th dose independent rect. 15 2
325 103.46 humidity 60.0 10 < th dose dependent rect. 17 19
340 103.49 humidity 90.0 4320 < th dose independent rect. 14 1
342 103.49 radiation 1.0 30 < th dose independent rect. 5 9
345 103.50 wind 1.0 720 < th dose independent rect. 18 4
349 103.50 radiation 1.0 90 < th dose dependent rect. 5 12
350 103.50 humidity 60.0 90 < th dose dependent rect. 16 19
369 103.52 radiation 40.0 43200 < th dose independent rect. 14 19
375 103.53 radiation 10.0 43200 < th dose independent rect. 16 14
379 103.54 humidity 80.0 43200 < th dose independent rect. 21 1
380 103.54 precipitation 0.1 43200 < th dose independent rect. 19 2
382 103.54 precipitation 0.1 43200 > th dose dependent rect. 18 2
383 103.54 precipitation 0.1 43200 < th dose dependent rect. 19 2
390 103.55 radiation 40.0 43200 < th dose independent rect. 8 2
391 103.55 precipitation 0.1 43200 > th dose independent rect. 19 2
398 103.55 radiation 1.0 30 < th dose independent rect. 5 7
422 103.56 precipitation 0.1 43200 > th dose dependent rect. 13 1
432 103.57 wind 1.0 90 < th dose dependent sin 6 NA
433 103.57 wind 3.0 43200 < th dose dependent rect. 20 1
434 103.57 temperature 20.0 4320 < th dose dependent rect. 6 3
435 103.57 wind 1.0 720 < th dose dependent rect. 17 5
439 103.58 radiation 20.0 43200 > th dose independent rect. 6 1
462 103.59 radiation 10.0 43200 < th dose independent rect. 16 3
475 103.59 wind 5.0 43200 < th dose dependent rect. 14 1
476 103.59 temperature 25.0 90 < th dose dependent rect. 5 1
496 103.60 radiation 40.0 43200 < th dose independent sin 12 NA
512 103.60 wind 1.0 90 < th dose dependent rect. 15 14
542 103.62 radiation 40.0 43200 > th dose dependent sin 12 NA
546 103.63 radiation 10.0 43200 < th dose independent sin 12 NA
574 103.64 radiation 10.0 43200 < th dose independent rect. 11 1
578 103.64 humidity 80.0 43200 < th dose independent rect. 20 3
604 103.65 humidity 80.0 43200 > th dose independent rect. 21 1
607 103.65 radiation 10.0 43200 < th dose independent rect. 10 5
611 103.65 wind 1.0 14400 < th dose dependent rect. 23 1
649 103.66 radiation 10.0 43200 < th dose independent rect. 9 22
656 103.67 atmosphere 1015.0 43200 < th dose independent rect. 19 1
671 103.68 radiation 10.0 43200 > th dose independent rect. 17 1
689 103.68 radiation 10.0 43200 < th dose independent rect. 14 22
692 103.68 radiation 10.0 43200 < th dose independent rect. 16 23
693 103.68 humidity 90.0 4320 > th dose dependent rect. 14 1
694 103.68 radiation 1.0 4320 < th dose dependent rect. 21 1
697 103.69 humidity 60.0 90 > th dose independent sin 9 NA
704 103.69 radiation 10.0 43200 < th dose independent rect. 16 20
711 103.69 wind 1.0 720 < th dose dependent rect. 21 1
718 103.70 radiation 10.0 43200 < th dose independent no NA NA
720 103.70 precipitation 0.1 43200 > th dose independent rect. 13 1
735 103.70 radiation 10.0 43200 < th dose independent rect. 4 14
744 103.70 humidity 60.0 90 > th dose independent rect. 21 17
806 103.70 wind 1.0 43200 > th dose dependent rect. 14 1
811 103.70 wind 1.0 90 < th dose dependent rect. 1 15
820 103.71 wind 1.0 43200 > th dose independent rect. 24 1
821 103.71 humidity 50.0 43200 < th dose independent rect. 12 1
875 103.72 radiation 10.0 43200 < th dose independent sin 0 NA
879 103.72 humidity 80.0 43200 > th dose independent rect. 20 3
934 103.72 radiation 40.0 43200 > th dose dependent rect. 13 22
938 103.73 radiation 10.0 43200 < th dose independent sin 22 NA
952 103.73 radiation 10.0 43200 < th dose independent rect. 9 9
954 103.73 radiation 10.0 43200 < th dose independent rect. 5 10